BGC0001758 - 1 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

BGC0001758 (Mycetohabitans rhizoxinica HKI 454)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	NRPS	1	22,977	rhizomide A/rhizomide B/rhizomide C	NRPS:Type I	100%

BGC0001758 - Region 1 - NRPS

Download region GenBank file

Download region SVG

Location: 1 - 22,977 nt. (total: 22,977 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

MIBiG

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

External annotation

Name		MIBiG
Version		4.0alpha

Type		Subregion
Location		1 - 22,978
Label		BGC0001758

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001758	1.00	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001844	0.42	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0002135	0.38	NRP	bovienimide A	Xenorhabdus bovienii SS-2004
BGC0001128	0.37	NRP	gamexpeptide C	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001135	0.37	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001132	0.37	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0002286	0.36	NRP	ririwpeptide A, ririwpeptide B, ririwpeptide C	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001833	0.36	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0002518	0.36	NRP	syringafactin A, syringafactin C	Pseudomonas sp. SZ57
BGC0001641	0.32	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001758	1.00	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001844	0.74	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0002135	0.70	NRP	bovienimide A	Xenorhabdus bovienii SS-2004
BGC0001128	0.70	NRP	gamexpeptide C	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001135	0.70	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0001132	0.69	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0002286	0.69	NRP	ririwpeptide A, ririwpeptide B, ririwpeptide C	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001833	0.69	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0002518	0.69	NRP	syringafactin A, syringafactin C	Pseudomonas sp. SZ57
BGC0001641	0.65	NRP	kolossin	Photorhabdus laumondii subsp. laumondii TTO1

Similar known gene clusters from MIBiG 4.0

Module view

Legend

NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 22977:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Leu - Thr - Tyr - Ala - Ala - Ala - Val)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

RBRH_RS12370

Search NORINE for peptide: strict or relaxed

AMP-binding (458..851): Leu

nrpys: Leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
Single AA prediction:: leu (Leu)