BGC0001838: WLIP biosynthetic gene cluster from Pseudomonas putida
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
View antiSMASH-generated output
Download Cluster GenBank file
Download region SVG
Location: 1 - 31,000 nt. (total: 31,000 nt).
This entry is originally from NCBI GenBank JN982333.1.

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset zoomreset view
zoomzoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
General
Compounds
Genes
NRP
History
NRPS/PKS domains
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0001838
Short description WLIP biosynthetic gene cluster from Pseudomonas putida
Status Minimal annotation: no
A minimal annotation only contains information on the BGC loci and one or more linked chemical product(s)

Completeness: complete
Whether the loci encodes everything needed for the pathway producing the compound(s)
Remarks "Wlip gene cluster"
Biosynthetic class(es)
  • NRP
Loci NCBI GenBank: JN982333.1
Compounds
  • WLIP
Species Pseudomonas putida [taxonomy]
References
Chemical products information
WLIP [synonyms: white line inducing principle]
(no structure information available)
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • AFJ23822.1
 119 - 1234 (-) sigma-54-dependent transcriptional regulator
copy AA seq
copy Nt seq
  • AFJ23823.1
 1245 - 2432 (-) acyl-COA dehydrogenase
copy AA seq
copy Nt seq
  • AFJ23824.1
 2442 - 3002 (-) FMN reductase
copy AA seq
copy Nt seq
  • AFJ23825.1
  • wlpB
 3354 - 16256 (+) WLIP synthetase B
copy AA seq
copy Nt seq
  • AFJ23826.1
  • wlpC
 16253 - 27655 (+) WLIP synthetase C
copy AA seq
copy Nt seq
  • AFJ23827.1
  • wlpD
 27792 - 28949 (+) MacA-like protein
copy AA seq
copy Nt seq
  • AFJ23828.1
  • wlpE
 28946 - 30958 (+) MacB-like ABC transporter protein
copy AA seq
copy Nt seq
NRP-specific information
Subclass N/A
Cyclic? yes
NRP-synthases
Gene Modules
wlpB
Module ?
Specificity: threonine
Evidence for specificity:
Module ?
Specificity: valine
Evidence for specificity:
Module ?
Specificity: leucine
Evidence for specificity:
Module ?
Specificity: serine
Evidence for specificity:
wlpC
Module ?
Specificity: leucine
Evidence for specificity:
Module ?
Specificity: serine
Evidence for specificity:
Module ?
Specificity: isoleucine
Evidence for specificity:
Annotation changelog
MIBiG version Submitter Notes
2.0
  • Hidden contributor (ID: 7UL6TWXRIUBGJOWL4IAXMLCC, no GDPR consent given).
  • Submitted
3.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Updated bioactivity data
  • Added NRP substrate specificities
3.1
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Update chemical activity to schema version 2.11
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.