BGC0001899 - 1 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

BGC0001899 (Plenodomus lingam JN3)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	T1PKS	1	54,810	abscisic acid	PKS	100%

BGC0001899 - Region 1 - T1PKS

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Location: 1 - 54,810 nt. (total: 54,810 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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Gene details

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Gene overview

MIBiG

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

External annotation

Name		MIBiG
Version		4.0alpha

Type		Subregion
Location		1 - 54,811
Label		BGC0001899

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001899	0.75	Polyketide	abscisic acid	Leptosphaeria maculans JN3
BGC0001252	0.30	Polyketide	UNII-YC2Q1O94PT	Alternaria alternata
BGC0002155	0.30	Polyketide	nectriapyrone C, nectriapyrone D, nectriapyrone	Pyricularia oryzae 70-15
BGC0002525	0.29	Polyketide	fusarubin, 1233A, 1233B, NG-391, lucilactaene	Fusarium sp.
BGC0002194	0.26	Polyketide	epipyrone A	Epicoccum nigrum
BGC0002222	0.25	Polyketide	zopfiellin	Diffractella curvata
BGC0002515	0.24	Polyketide	solanapyrone A	Ascochyta rabiei
BGC0002224	0.24	Polyketide	zopfiellin	Diffractella curvata
BGC0001606	0.24	Polyketide	gibepyrone-A	Fusarium fujikuroi IMI 58289
BGC0000056	0.23	Polyketide	esperamicin	Actinomadura verrucosospora

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001899	1.00	Polyketide	abscisic acid	Leptosphaeria maculans JN3
BGC0001893	0.67	Other	abscisic acid	Botrytis cinerea B05.10
BGC0002525	0.66	Polyketide	fusarubin, 1233A, 1233B, NG-391, lucilactaene	Fusarium sp.
BGC0000670	0.66	Terpene	thalianol, thaliandiol	Arabidopsis thaliana
BGC0002406	0.65	Other	hydroxycinnamoyltyramine	Oryza sativa Japonica Group
BGC0001528	0.65	Terpene	betaestacin	Phoma betae
BGC0000677	0.65	Terpene	cyclooctatin	Streptomyces melanosporofaciens
BGC0001252	0.64	Polyketide	UNII-YC2Q1O94PT	Alternaria alternata
BGC0002515	0.64	Polyketide	solanapyrone A	Ascochyta rabiei
BGC0002155	0.63	Polyketide	nectriapyrone C, nectriapyrone D, nectriapyrone	Pyricularia oryzae 70-15

Similar known gene clusters from MIBiG 4.0

Module view

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NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 5443 - 53445:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Me-pk)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

LEMA_P087730.1

PKS_AT (571..891): pk

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 66.7%; Methylmalonyl-CoA: 58.3%; Ethylmalonyl-CoA: 54.2%

minowa: Methoxymalonyl-CoA

Prediction, score:

Methoxymalonyl-CoA: 78.6
Methylmalonyl-CoA: 77.6
Malonyl-CoA: 72.1
Isobutyryl-CoA: 41.3
Propionyl-CoA: 35.2
Ethylmalonyl-CoA: 31.9
Benzoyl-CoA: 29.7
CHC-CoA: 20.1
inactive: 17.6
2-Methylbutyryl-CoA: 17.3
fatty_acid: 16.7
trans-1,2-CPDA: 13.8
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0