LOCUS       BGC0002144              5515 bp    DNA     linear   CON 30-APR-2023
DEFINITION  Rhizobium sp. Pop5 Contig684, whole genome shotgun sequence.
ACCESSION   BGC0002144
VERSION     BGC0002144
KEYWORDS    .
SOURCE      Rhizobium sp. Pop5
  ORGANISM  Rhizobium sp. Pop5
            Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
            Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AMCP01000684.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            ##antiSMASH-Data-START##
            Version      :: 7.1.0
            Run date     :: 2024-10-17 17:01:47
            ##antiSMASH-Data-END##
FEATURES             Location/Qualifiers
     CDS             complement(1..1773)
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA];
                     GO:0042626 - ATPase-coupled transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /gene_functions="transport (smcogs) SMCOG1288:ABC
                     transporter related protein (Score: 250.7; E-value:
                     5.1e-76)"
                     /gene_kind="transport"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007601663.1"
                     /locus_tag="RCCGEPOP_RS20745"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /old_locus_tag="RCCGEPOP_21732"
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="WP_128623601.1"
                     /transl_table=11
                     /translation="MGKSESVFRVINNMLLNNRRQRASFALVLCTITLTAIGAALFPVF
                     FSLGIDALAEGNSGGSPGIRYIIAFGIGLTIVGALEQAQWLTFGPMNLRLQRHLTTHVF
                     NHALSLPYRKLREYTTYEIGRTVERGLDAVREITSNLTFFLIPTFIELVIAASVIAFMI
                     DVWIALLLFSALFVYAAIANVSATKIRGATENAMETGIEAWTFGLDGVANAELVQQANR
                     VEEFTERLNLKLKVNDKAWAVTFRQRAFFGVLQALVFGAVVLGVLWRGASDVSEGAMSI
                     GNLVLLNTYIIRLLQPVETFARVYREVNSSLGEARLLMDLLSVPVPAPHLRSDRGDRSP
                     MSLQLSGVSVTVSENALLEDLSFSVAAGAKLYIVGQSGVGKSSLLRVISCLSVPDGGEY
                     LIDGTRVGEQNAGLFRPSISVVQQDCLLFDWSISENIAFGVDASPAEIELVIRKLGLNE
                     VVRRHQDLGEPTVGERGSRLSGGEKQRVALARALLAKPRLLVLDEPTAALDEANRKRVL
                     EAIAELQQTCTTVFVTHDLSLLDADSQVLFLAPDRRHFTGSHREVLATSDEYRSFNSSG
                     PAATWAEPLSFASK"
     protocluster    1..5515
                     /aStool="rule-based-clusters"
                     /category="RiPP"
                     /contig_edge="True"
                     /core_location="[3046:5019]"
                     /cutoff="20000"
                     /detection_rule="((((goadsporin_like or PF00881 or
                     TIGR03605) and (YcaO or TIGR03604)) or TIGR03882 or
                     TIGR03603 or TIGR03602) and not cyanobactin_synth)"
                     /neighbourhood="10000"
                     /product="LAP"
                     /protocluster_number="1"
                     /tool="antismash"
     proto_core      3047..5019
                     /aStool="rule-based-clusters"
                     /tool="antismash"
                     /cutoff="20000"
                     /detection_rule="((((goadsporin_like or PF00881 or
                     TIGR03605) and (YcaO or TIGR03604)) or TIGR03882 or
                     TIGR03603 or TIGR03602) and not cyanobactin_synth)"
                     /neighbourhood="10000"
                     /product="LAP"
                     /protocluster_number="1"
     cand_cluster    1..5515
                     /candidate_cluster_number="1"
                     /contig_edge="True"
                     /detection_rules="((((goadsporin_like or PF00881 or
                     TIGR03605) and (YcaO or TIGR03604)) or TIGR03882 or
                     TIGR03603 or TIGR03602) and not cyanobactin_synth)"
                     /kind="single"
                     /product="LAP"
                     /protoclusters="1"
                     /tool="antismash"
     subregion       1..5515
                     /aStool="externally annotated by: MIBiG"
                     /contig_edge="True"
                     /label="BGC0002144"
                     /subregion_number="1"
                     /tool="antismash"
     region          1..5515
                     /candidate_cluster_numbers="1"
                     /contig_edge="True"
                     /product="LAP"
                     /region_number="1"
                     /rules="((((goadsporin_like or PF00881 or TIGR03605) and
                     (YcaO or TIGR03604)) or TIGR03882 or TIGR03603 or
                     TIGR03602) and not cyanobactin_synth)"
                     /subregion_numbers="1"
                     /tool="antismash"
     gene            complement(1..1773)
                     /locus_tag="RCCGEPOP_RS20745"
                     /old_locus_tag="RCCGEPOP_21732"
     gene            1960..2127
                     /locus_tag="RCCGEPOP_RS37510"
     CDS             1960..2127
                     /codon_start=1
                     /inference="COORDINATES: protein motif:HMM:NF038168.1"
                     /locus_tag="RCCGEPOP_RS37510"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /product="phazolicin family TOMM bacteriocin"
                     /protein_id="WP_164841440.1"
                     /transl_table=11
                     /translation="MTTQILNPPQFGTEIEFVDAGDSTVQTAATCARCDSSSRCGASGK
                     SSGSASSIST"
     gene            2185..3033
                     /locus_tag="RCCGEPOP_RS20750"
                     /old_locus_tag="RCCGEPOP_21737"
     CDS             2185..3033
                     /codon_start=1
                     /gene_functions="biosynthetic-additional
                     (rule-based-clusters) TIGR04424"
                     /gene_kind="biosynthetic-additional"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007601659.1"
                     /locus_tag="RCCGEPOP_RS20750"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /old_locus_tag="RCCGEPOP_21737"
                     /product="McbB family protein"
                     /protein_id="WP_008531782.1"
                     /sec_met_domain="TIGR04424 (E-value: 2.3e-74, bitscore:
                     239.1, seeds: 14, tool: rule-based-clusters)"
                     /transl_table=11
                     /translation="MFSVSPFVLSSAPADGAWQLFTPVGAARITDANLVAALGEIKALR
                     SRVDEVEIEKILERKTLPVSAAQQFLERLKVLRKVEDMKTVAVFSPSQTLADDVVQLIL
                     DRDAVSCRACTTLSDIADADLILAIQDRYEPGLAKDIYAACKSKREAILLHSYFVFRHF
                     IIDGFYSSAIDLPDHFSGIHNLAGLDRSSKFKPSSWADYFFSDPYAIETMHVPTFPAAQ
                     IETAVALHLAYMRLRPLIADGVSPLFPDDLSTVIELNLDTGRIERHRGVHSNFSSSLRE
                     I"
     gene            3047..3847
                     /locus_tag="RCCGEPOP_RS20755"
                     /old_locus_tag="RCCGEPOP_21742"
     CDS             3047..3847
                     /codon_start=1
                     /gene_functions="biosynthetic (rule-based-clusters) LAP:
                     PF00881"
                     /gene_kind="biosynthetic"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007601657.1"
                     /locus_tag="RCCGEPOP_RS20755"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /old_locus_tag="RCCGEPOP_21742"
                     /product="nitroreductase family protein"
                     /protein_id="WP_008531784.1"
                     /sec_met_domain="PF00881 (E-value: 6.2e-11, bitscore: 31.3,
                     seeds: 78, tool: rule-based-clusters)"
                     /transl_table=11
                     /translation="MRHVKISSVNQISHAGQFVDPEVESEIRAFHQHCISVAGSPLENA
                     LSQPYLSIEDLKRAETFETRFSHITRTIEFPDASVADTTWRWPSLDKGGTRPIDFSTVH
                     QIFSEALGADYARRRPYPSGGALYSVESVAILGNVLGNVVGTEEGFNVLHYLPVSNAFE
                     MLRGGYDPTLFNEIYKIERAAFYVVYFINLKKAIFKYRSRGYRLALMEVGSMYQQMLRV
                     AQDHGIRSRVLSGFSEYALAKNCGLDSRVLLPGIIQAFAYPEEN"
     gene            3895..5019
                     /locus_tag="RCCGEPOP_RS20760"
                     /old_locus_tag="RCCGEPOP_21747"
     CDS             3895..5019
                     /codon_start=1
                     /gene_functions="biosynthetic (rule-based-clusters) LAP:
                     YcaO"
                     /gene_kind="biosynthetic"
                     /inference="COORDINATES: protein motif:HMM:NF014661.2"
                     /locus_tag="RCCGEPOP_RS20760"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /old_locus_tag="RCCGEPOP_21747"
                     /product="YcaO-like family protein"
                     /protein_id="WP_164841441.1"
                     /sec_met_domain="YcaO (E-value: 2.2e-24, bitscore: 75.4,
                     seeds: 127, tool: rule-based-clusters)"
                     /transl_table=11
                     /translation="MTPAYPASIFEPTVFSADDANDLNGHGFGLGPGVAVKAMGEYFER
                     YAAFRAVTSRGMGKIAEMRLDPEEQDALVLALRQTCHDDVRDDIEAASFRLVEVNRLGE
                     DRMALYPTLLLSLHSFDEQRDVRFAPVRDSSGSAIHPDKKTAFQGALLEFVERQCTTAM
                     WVSRRCNAIEGLGAALKDRKARAIHDQMAMAGSLNVLDLSFLKGASVKFCEYKSQDPDA
                     LVNFSCGCSADFDPDAATAKAFTEAWQTSLLLPQMEFFGAREYGSTSLKDNFQAANRAG
                     FELGVGVDPRAIGADGNDRNMETLVDSILSVSRNVYLYFRSIYVAGTKLHFCRVVSPDF
                     FLHMSPGDHNNNDNRWIDLFCEKASRRLEPMPFS"
     gene            complement(5057..5515)
                     /locus_tag="RCCGEPOP_RS20765"
                     /old_locus_tag="RCCGEPOP_21752"
     CDS             complement(5057..5515)
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0008270 - zinc ion binding [Evidence IEA]"
                     /GO_process="GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006727219.1"
                     /locus_tag="RCCGEPOP_RS20765"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /old_locus_tag="RCCGEPOP_21752"
                     /product="MucR family transcriptional regulator"
                     /protein_id="WP_008531786.1"
                     /transl_table=11
                     /translation="MYSKPQNSAPENITELTANIVTAYVGRHDVSMQDLPSLIASVQAA
                     LGQGPRPTELALATEGAPTTHQKPAVPIDRSIEKDFLICLEDGRRFRSLKRHLKTHYDL
                     TPDEYRIKWGLPPEYPMVAPSYAAKRSSIAKSIGLGIAVSKRSQAKAK"
ORIGIN
        1 tcatttggaa gcaaacgaca aaggttcagc ccatgttgcc gccggcccgc tgctgttaaa
       61 gctccgatat tcgtcgctcg tcgccagaac ttctctgtgg gatccggtga aatgacgtcg
      121 atccggcgca agaaacagaa cttggctatc cgcatcgagc agggacagat catgcgtgac
      181 gaaaaccgtc gtgcatgtct gctgcaactc tgcgatggct tccagcaccc gcttccggtt
      241 cgcttcgtcc aaggcagcgg tgggttcgtc caggacaagc agccgcggtt tggcgagcaa
      301 ggcacgcgca agcgcgacac gttgcttttc gccgcccgac aggcggcttc cccgttcgcc
      361 gaccgtcggt tctccgaggt cctgatggcg gcggacgact tcgttcaggc cgagcttgcg
      421 gatgaccagt tcgatctccg ccggtgatgc gtcgacgcca aaagcaatat tctcggatat
      481 cgaccagtcg aacagcaagc aatcctgctg cacgacgctg atgcttggtc tgaagagacc
      541 ggcattctgt tcgccaaccc tggttccgtc gatcagatac tcaccgccat ccggaacgga
      601 gaggcaggag atgactctta acaaggaaga tttgccgact cccgattggc cgacgatata
      661 gagctttgcc ccggccgcga cggagaagga cagatcttca agcaaggcat tctcgctgac
      721 ggtcacggaa acaccggata gctgcaagga catcggcgat cgatctccgc gatccgaccg
      781 gaggtgaggt gccggcaccg gcacggacag gagatccata agcaatctcg cttcccccag
      841 cgacgaattc acttcgcggt agacacgcgc gaaagtctcc acaggctgca ggagacggat
      901 gatgtaggtg tttagaagca ccagattgcc gatgctcatg gctccctcgg aaacgtcaga
      961 ggccccgcgc cacaggacgc cgagcacaac ggctccgaag acgagcgcct gcagaacacc
     1021 gaaaaaggct ctctgtctga aggtgaccgc ccaggcttta tcgttgacct tgagtttgag
     1081 gttcaagcgt tccgtgaatt cttcgaccct gtttgcctgt tgaacgagtt ccgcgtttgc
     1141 gacaccgtcg agcccgaagg tccacgcttc aattccggtc tccatcgcat tctctgtggc
     1201 cccgcggatt ttcgtcgccg agacattggc gatcgccgcg tagacgaaca gggcggaaaa
     1261 cagcagcagc gcgatccaga cgtcgatcat gaaggcgatg accgatgcgg caatcaccaa
     1321 ttcaataaat gtaggtatca ggaagaacgt caggttggag gttatttccc ggaccgcgtc
     1381 cagaccgcgc tctaccgtcc tgccgatctc ataagtcgtg tattccctca gcttgcgata
     1441 aggcaaggag agggcgtgat tgaagacatg tgtggtcaaa tgcctttgaa ggcgcagatt
     1501 catcgggccg aaggtcagcc attgagcctg ttcgagagcg ccgacgatcg tcaagccgat
     1561 cccgaaggcg attatgtagc gaatacctgg gctcccacca gaatttccct cagccagcgc
     1621 atcgatacct agcgagaaga acaccggaaa cagcgccgcg ccgatcgccg taagcgttat
     1681 agtgcacaat accaaggcga aggatgcgcg ttgcctgcga ttatttagaa gcatattatt
     1741 aattactctg aatacgcttt cagatttacc cataataacc gctccatatt tcgaatttta
     1801 ttgatcgata caagtgaata tctaagaata ttattcttga actctcttga tttatacaag
     1861 gtatcacaaa atttcttctt gacgaacgca aaaattgaaa tagttttgct tttgcagcgt
     1921 ggtgctgcaa tttcaactcg caaataggag gtatgtgaaa tgacgacgca gattctgaat
     1981 ccgccgcagt ttggcaccga aatcgagttc gtcgacgcgg gcgattccac ggttcaaacg
     2041 gctgcgactt gcgcacgttg cgacagcagc agccgttgcg gcgcctccgg caagtcctcc
     2101 ggttcggcca gctcgatttc gacctgatag acaacggctg gccccgatca ggggccgcca
     2161 cctttcacaa cgaggtttgc aaagatgttt tcggtttccc cgttcgtact cagttcggcg
     2221 ccggcggatg gcgcatggca gcttttcact ccggtgggtg cggcgcgcat caccgacgca
     2281 aatcttgtcg cggccctcgg cgaaataaaa gcgctccggt ctcgtgttga cgaggtggag
     2341 atcgaaaaga tcctcgagag gaaaacactt ccggtcagcg ccgcccagca gtttcttgaa
     2401 cgcctgaaag tgcttcgaaa agtcgaagat atgaaaacag tggcggtatt ttcgccgtcc
     2461 cagacacttg ccgatgatgt cgtgcaattg atccttgacc gcgacgcggt ctcctgccgg
     2521 gcatgcacga ccctttcaga tatcgcggac gccgatttga tcctggcaat tcaggatcgc
     2581 tacgagccgg ggcttgccaa ggacatctac gccgcctgca aatcgaagag agaggccatc
     2641 ctgcttcact cctattttgt tttccggcat tttatcatcg acggcttcta ttcgtcggcc
     2701 atcgatctgc ccgaccattt tagcggtatc cataatctcg ccggacttga ccggtcgtcg
     2761 aaattcaagc cctccagttg ggccgactat ttcttctccg atccctatgc gatcgaaacg
     2821 atgcatgttc cgacctttcc ggccgcccag atcgaaacgg ccgtcgcgct gcatcttgct
     2881 tacatgcggc tccgccccct gatagcggac ggcgtatcgc cgctttttcc cgacgatctc
     2941 agcacggtta tcgagctcaa tctcgacaca ggccgtatcg aacggcatcg gggcgtccat
     3001 tccaatttca gctcgtcgct gcgagagatt tagggaggac tgtcagatgc gacacgtcaa
     3061 gatatcctcg gtgaaccaga tttcacacgc cggccagttc gttgatccgg aggtcgaaag
     3121 cgagatccgt gcatttcatc agcactgcat ttccgttgca ggttctccgt tggagaacgc
     3181 actcagccag ccttaccttt ccatcgaaga cctgaaacga gcggagacct tcgaaacgcg
     3241 gttctcccac attacccgca ccatcgagtt tcccgatgcc tctgtcgccg acacgacctg
     3301 gcggtggccg tcgcttgaca aaggcggcac gcgaccaatt gatttctcca ccgttcacca
     3361 aattttttca gaagcgcttg gtgccgatta cgccagacgt cggccttacc cctccggagg
     3421 cgccctttac agcgtcgagt cggttgctat cctgggaaac gtcctgggaa acgtcgtggg
     3481 aacggaagaa ggcttcaacg tccttcatta cctgccggtg agcaacgcct tcgaaatgct
     3541 tcgaggcgga tacgatccca cactcttcaa tgaaatctac aagatcgagc gcgcggcatt
     3601 ttacgtcgtg tatttcatca atctcaagaa ggcgatcttc aaatatcgtt cgcgcggcta
     3661 ccgcctggcc ttgatggaag tcgggtcgat gtatcagcaa atgctgaggg tcgcccaaga
     3721 ccatggaata cgctcccgtg tcctgtcggg attttccgaa tacgcccttg cgaaaaactg
     3781 cgggctggac agccgcgttc tcctgccggg gatcatccag gcctttgcct atccggagga
     3841 gaattaatgc aacggtcata tcgcagtttt gcttcccgga cgccgagata tcgtgtgacc
     3901 cctgcctatc ccgcgagcat cttcgaaccg acggtgttct cggccgatga tgcgaacgac
     3961 ctcaatggtc acggatttgg ccttgggcca ggcgtcgcgg tcaaagccat gggtgagtat
     4021 tttgaacgct atgcggcgtt ccgcgctgtg acctcccgcg ggatgggtaa gatcgccgag
     4081 atgcggcttg atccggaaga gcaagatgct ttggttcttg cgcttcgcca gacatgtcac
     4141 gatgacgtgc gcgacgatat cgaggccgcg agttttcgac tggtcgaagt aaacaggctc
     4201 ggggaagacc gcatggctct ctacccaacc ctgcttctgt cattgcacag cttcgacgaa
     4261 cagagagacg ttcgctttgc tccggtccga gacagctccg gatcggcgat acatccggat
     4321 aaaaagactg catttcaggg cgctctgctg gaatttgtcg agcgccaatg cacgaccgcg
     4381 atgtgggtct cgcggcgctg caacgctatc gaaggtcttg gcgctgcgct caaggaccgc
     4441 aaggcgcgcg ccatccatga tcagatggcg atggcgggaa gcctgaatgt tctcgacctt
     4501 tcgttcttga aaggcgccag cgtcaagttt tgcgaataca agtcgcagga tccggatgca
     4561 ttggtgaatt tctcctgcgg ctgctcggcg gatttcgatc ccgatgccgc cacggcaaag
     4621 gcctttaccg aagcatggca gacatcgctt ctcctccctc agatggagtt ctttggagcc
     4681 cgagaatatg gcagcacctc tctgaaggat aattttcagg ctgcgaacag ggcaggtttc
     4741 gagttgggtg tcggcgtcga tcccagggca atcggagcag acggaaacga cagaaacatg
     4801 gagacgcttg tggacagcat tctttccgta tccaggaacg tctatctcta tttccgcagc
     4861 atctatgttg ccggcaccaa gctgcacttc tgccgcgtcg tgtcgccgga tttcttcctt
     4921 cacatgagcc cgggcgacca taacaacaac gacaacagat ggatcgatct gttctgcgag
     4981 aaagcgtcca gacggctgga gcccatgcca ttttcataac aaaggcgggg gagcgacccc
     5041 cgcctccctg ttcgccttat tttgctttag cttgagagcg ttttgaaacg gcgatgccca
     5101 atcctatgct ttttgcgatc gacgaccgtt tggcggcata ggagggcgcg accataggat
     5161 attccggcgg aaggccccat ttgatgcggt actcgtcagg cgtcaggtcg taatgggttt
     5221 tcaaatgccg cttcaacgaa cggaatcgtc tcccgtcctc caagcaaatt aggaagtcct
     5281 tctcgatcga ccgatcgata ggaacggctg gtttttgatg tgtggtgggt gctccttcgg
     5341 tggccaaggc cagttcggtc ggacgaggtc cttgacccag agcggcttgc acgctggcga
     5401 tgagggaagg cagatcctgc atcgagacat cgtgcctgcc cacataggca gtgacgatgt
     5461 tcgcagtcag ttcggtgatg ttctcgggtg ccgaattttg gggttttgag tacat
//
