BGC0002297: MC-LR biosynthetic gene cluster from Phormidium sp. LP904c
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Location: 1 - 54,162 nt. (total: 54,162 nt).
This entry is originally from NCBI GenBank MK870090.1.

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset zoomreset view
zoomzoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
General
Compounds
Genes
Biosynthesis
History
NRPS/PKS domains
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0002297
Short description MC-LR biosynthetic gene cluster from Phormidium sp. LP904c
Status Quality: questionable
The quality level of this entry.

Status: active
The status of this entry.

Completeness: unknown
Whether the entry covers everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • NRPS (Type I)
  • PKS (Unknown)
Loci
MK870090.1
1 - 54162
via
Compounds
  • MC-LR
  • MC-LHty
  • MC-HphHty
  • MC-LHph
  • MC-HphHph
Species Phormidium sp. LP904c [taxonomy]
References
Chemical products information
MC-LR Evidence:
(no structure information available)
MC-LHty Evidence:
(no structure information available)
MC-HphHty Evidence:
(no structure information available)
MC-LHph Evidence:
(no structure information available)
MC-HphHph Evidence:
(no structure information available)
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • QCQ67872.1
  • mcyI
1 - 951 (-) phosphoglycerate dehydrogenase
    copy AA seq
    copy Nt seq
    • QCQ67873.1
    • mcyJ
    1021 - 2031 (-) O-methyltransferase
      copy AA seq
      copy Nt seq
      • QCQ67874.1
      • mcyD
      2278 - 14001 (+) type I polyketide synthase
        copy AA seq
        copy Nt seq
        • QCQ67875.1
        • mcyE
        14077 - 24546 (+) hybrid peptide synthetase/polyketide synthase
          copy AA seq
          copy Nt seq
          • QCQ67876.1
          • mcyF
          24560 - 25276 (+) amino acid racemase
            copy AA seq
            copy Nt seq
            • QCQ67877.1
            • mcyG
            25463 - 33397 (+) hybrid peptide synthetase/polyketide synthase
              copy AA seq
              copy Nt seq
              • QCQ67878.1
              • mcyH
              33626 - 35380 (+) ABC transporter
                copy AA seq
                copy Nt seq
                • QCQ67879.1
                • mcyA
                35453 - 43804 (+) non-ribosomal peptide synthetase
                  copy AA seq
                  copy Nt seq
                  • QCQ67880.1
                  • mcyB
                  43820 - 50212 (+) non-ribosomal peptide synthetase
                    copy AA seq
                    copy Nt seq
                    • QCQ67881.1
                    • mcyC
                    50272 - 54162 (+) non-ribosomal peptide synthetase
                      copy AA seq
                      copy Nt seq
                      Biosynthesis information

                      Biosynthetic modules

                      Name
                      Unk01
                      Type
                      nrps-type1
                      Genes
                      mcyG
                      Substrates
                      cinnamic acid, hydrocinnamic acid, D-phenylalanine (evidence: Structure-based inference, Homology)
                      Integrated Monomers
                      Domains
                      adenylation
                      Name
                      Unk02
                      Type
                      nrps-type1
                      Genes
                      mcyE
                      Substrates
                      D-glutamic acid branched (evidence: Structure-based inference [1])
                      Integrated Monomers
                      Domains
                      adenylation
                      Name
                      Unk03
                      Type
                      nrps-type1
                      Genes
                      mcyA
                      Substrates
                      serine (evidence: Structure-based inference [1])
                      Integrated Monomers
                      Domains
                      adenylation
                      Name
                      Unk04
                      Type
                      nrps-type1
                      Genes
                      mcyA
                      Substrates
                      alanine (evidence: Structure-based inference [1])
                      Integrated Monomers
                      Domains
                      adenylation
                      Name
                      Unk05
                      Type
                      nrps-type1
                      Genes
                      mcyB
                      Substrates
                      leucine, homophenylalanine, phenylalanine (evidence: Structure-based inference [1])
                      Integrated Monomers
                      Domains
                      adenylation
                      Name
                      Unk06
                      Type
                      nrps-type1
                      Genes
                      mcyB
                      Substrates
                      3S-methyl-D-aspartic acid branched, D-aspartic acid branched (evidence: Structure-based inference [1])
                      Integrated Monomers
                      Domains
                      adenylation
                      Name
                      Unk07
                      Type
                      nrps-type1
                      Genes
                      mcyC
                      Substrates
                      arginine, homotyrosine (evidence: Structure-based inference [1])
                      Integrated Monomers
                      Domains
                      adenylation
                      Annotation changelog

                      Entry version: next

                      Date
                      Changes
                      Submitters
                      Reviewers
                      MIBiG v4 annotathon
                      • (ID: 4CEPXXFDQQ46VQJXBT4B4AUO)
                      • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)

                      Entry version: 1

                      Date
                      Changes
                      Submitters
                      Reviewers
                      Entry added
                      • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                      • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                      Added NRP substrate specificities
                      • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                      • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                      Detailed domain annotation
                      Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
                      A domain glossary is available here, and an explanation of the visualisation is available here.
                      Selected features only
                      Show module domains
                      Similar known gene clusters from MIBiG 4.0
                      Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
                      Click on reference genes to show details of similarities to genes within the current region.
                      Click on an accession to open that entry in the MiBIG database.