BGC0002317: herbicolin O biosynthetic gene cluster from Pantoea agglomerans
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
View antiSMASH-generated output
Download Cluster GenBank file
Download region SVG
Location: 46,755 - 59,082 nt. (total: 12,328 nt).
This entry is originally from NCBI GenBank LIME01000008.1.

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset zoomreset view
zoomzoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
General
Compounds
Genes
Biosynthesis
History
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0002317
Short description herbicolin O biosynthetic gene cluster from Pantoea agglomerans
Status Quality: questionable
The quality level of this entry.

Status: active
The status of this entry.

Completeness: unknown
Whether the entry covers everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • ribosomal (RiPP)
Loci
LIME01000008.1
46755 - 59082
via Knock-out studies, Heterologous expression
Compounds
  • herbicolin O
  • mcceh252
  • pantocin A
Species Pantoea agglomerans [taxonomy]
References
Chemical products information
herbicolin O Evidence:
(no structure information available)
mcceh252 Evidence:
(no structure information available)
pantocin A Evidence:
Copy SMILES
Chemical database entries
NPAtlas
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • PAP10c_2322
  • KPA06467.1
 46900 - 47172 (-) hypothetical protein
    copy AA seq
    copy Nt seq
    • PAP10c_2323
    • KPA06468.1
    		 47495 - 47749 (+) hypothetical protein
      copy AA seq
      copy Nt seq
      • PAP10c_2324
      • KPA06469.1
      		 47963 - 49804 (+) hypothetical protein
        copy AA seq
        copy Nt seq
        • PAP10c_2325
        • KPA06470.1
        		 50432 - 50704 (+) hypothetical protein
          copy AA seq
          copy Nt seq
          • PAP10c_2326
          • KPA06471.1
          		 51514 - 51906 (+) hypothetical protein
            copy AA seq
            copy Nt seq
            • PAP10c_2327
            • KPA06472.1
            		 52436 - 53047 (+) relaxase
              copy AA seq
              copy Nt seq
              • PAP10c_2328
              • KPA06473.1
              		 53354 - 53935 (+) hypothetical protein
                copy AA seq
                copy Nt seq
                • PAP10c_2329
                • KPA06474.1
                		 54016 - 55110 (-) hypothetical protein
                  copy AA seq
                  copy Nt seq
                  • PAP10c_2330
                  • KPA06475.1
                  		 55186 - 56076 (-) protein PaaC
                    copy AA seq
                    copy Nt seq
                    • PAP10c_2331
                    • KPA06476.1
                    		 56081 - 56758 (-) 2OG-Fe(II) oxygenase
                      copy AA seq
                      copy Nt seq
                      • PAP10c_2332
                      • KPA06477.1
                      		 56755 - 57876 (-) thiamine biosynthesis protein ThiF
                        copy AA seq
                        copy Nt seq
                        • PAP10c_2333
                        • KPA06478.1
                        		 57932 - 58024 (-) hypothetical protein
                          copy AA seq
                          copy Nt seq
                          • PAP10c_2334
                          • KPA06479.1
                          		 58544 - 58957 (-) hypothetical protein
                            copy AA seq
                            copy Nt seq
                            Biosynthesis information
                            Annotation changelog

                            Entry version: 1

                            Date
                            Changes
                            Submitters
                            Reviewers
                            2022-09-15
                            Entry added
                            • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                            • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                            Similar known gene clusters from MIBiG 4.0
                            Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
                            Click on reference genes to show details of similarities to genes within the current region.
                            Click on an accession to open that entry in the MiBIG database.