{"version":"8.dev","input_file":"BGC0002331.gbk","records":[{"id":"BGC0002331","seq":{"data":"ATGACCTCGACCACCGTGCTGCATAAGTCCGTTTCCACGCCCGTGGATATCGAGACGCGTACCGACGCCTTTGATTACCGCCCAGGCCATATCAACGATATTCCTCGACTCGCCCAGTTGTTCCAAAGCGTCTACGGGCAAACCACCCACCCTTGCCAAAGCCCGGGCTATATCCGCAGTTCAATGGACTCCGGGCAACAACAATGGTTTGTCGCCGAACTCGACAGCTTTCTTGTCGGTTGCTGTTGTGTCGCTCGGCGCCCGTGGAACCAGTCCTGGGAAATGTCCCATGGCGTGGTCCACCCGGCCGCACGCAGAACCGGGGCGATTTCCAACCTGGTCAGACTGGGACTGGAGCGCCATCGGCCACACGCCATGGAGTTGGGTTTCTACGTCACGCGCAACATTGCAAGCCATGCCTTGATGAAGAAGATCAGGCCAGGCGTGCTGGTGGGGCACGACGGCGGGCCGGACAAGGTCGACGACATCAGGGAGTACCACCTGACCGCCCTGCTCCCCCCGGCGCAGGAAGGTTTCGTGCATGTCGCGCCGGGGTACGCGCATAACGACGTGGCCGGCCCGATCATCGCCAGGCTGTACGATGCACTGCGGCTCACCCCACAGCCCGGCGCCTACCCGGCCACTTGCCTGAGCGGCCCACCCGGTGCGCAAGTGCACGGCCCGTTGCGCTTCAACCATGAGCCGGGGGCCGACGCACTGATGGTGTCCGGCCAGGTCGGCGACAACCCGACGCAGCAAGCGACGCTGCAGGCACTCACTGCCCTCCTCCAGCGCCATCCCCAGGTGCAGTACTTCAGCGTGCATATCCTCGCCGACAAGCTGGAACTGCTCGCCGGCCTGGTCGGCCTTGGCTTTGCGATCACTGCCTACCTGCCGGCCTGGCACCTGGAGGGCGGTGTTCGCTACGACTGCATCCTGCTGGTCTTCGAAGTATTCGCCGACGCCCCTCGCAGCCATGGCTTCGATGATGAGGTGGCGTTCTTCGACCAGGCCTACGCGAAGTTGGCCGACAGCCTCTGCGCCATCGCCCTGCAATGAAAGCGCCTCTTACCTACCGTGCATTCCCATCCCGCAACGGATGAAGACTGGAGTATTCAGACAATGACAAAAGACCAATGGCTCGTTGTACGCAAACAGATCCCCGATGGCGCGAAAGAGCCCTGGACCGTGATGTTGTGGGTTGCCGACCTGCTGCTGCTGGTGCTGGCGTGGAACTTCTGGCTGAGTGAATCCACCGCATTGCAGGTTCTAGGCCTGCTGGTCGCGGGCCTGGCCACTGTGCAGCTGTACCTGATCCTGCACGAAGCCCTGCATGGCGCGACCTCGGACAATCGCCGGCTCAACGACATCATCGGCCACTTCAACGGCTGGTTGATCGCCCTGCCGTTCCTGGTTCGCCGACGCTTCCACATGGCCCACCACACCTGGACCGCACACCCGCTCAATGACCCGGAAAACCGCGGGATGATCGAGCGCTTCGCGGTCATGACCAAGAAGCAGGAACGCACCCTGGAGTTCATGTGGAAGCACTGGCTACCAATGATCGCCGTCAACCATTTCCTGCTGAACTGGCGTGCGCCGTTCATTGCCCGGGCCCAAGGTGACGACTCGCCGCGCATCCTCAAGGAGATTCGTTTCGCCCGCTTGTACCTGGTGGGTTACGGGGTGGTGGCGGCCGTTGCCTGGGCTTTCGGTCATCTGGCGGACCTGGCGCTGTTCTATCTGATCATCTGGCTGTTCCTGGCCCTGATCGTGGAACTGGTCAACCTGCCTCACCACGCCGAGGCCCCGCTGCTGGCGAAAGATGGCGAGCGTTTGCAGTTCTGGGAACAGGACCGCGTTTCGCACGATTGCAAGAGTGTGCCGGTGTGGTCGCGCTTCGTCATCCTCAACTTCAACCTGCACATCGTGCACCACGCCTTCCCCTCGGTGCCTTGGTACCGGTTGCCCGAGGCACATCGGATGCTGCACGAGCAGGATGGTAGCCCAGCGGCGTCGCAGCTCAATGAGTGGGACTTCTCCAGGAAGAATCGCCGCAGGCCGCTGCTGAAACTGATGGGTCATTTCTTCGACCATCGCGCCTGA","alphabet":"DNA"},"features":[{"location":"[0:2106](+)","type":"region","qualifiers":{"candidate_cluster_numbers":[],"contig_edge":["True"],"product":["unknown"],"region_number":["1"],"rules":[],"subregion_numbers":["1"],"tool":["antismash"]}},{"location":"[0:2106](+)","type":"subregion","qualifiers":{"aStool":["externally annotated by: MIBiG"],"contig_edge":["True"],"label":["BGC0002331"],"subregion_number":["1"],"tool":["antismash"]}},{"location":"[0:1059](+)","type":"gene","qualifiers":{"locus_tag":["PSEEN2785"]}},{"location":"[0:1059](+)","type":"CDS","qualifiers":{"codon_start":["1"],"db_xref":["EnsemblGenomes-Gn:PSEEN2785","EnsemblGenomes-Tr:CAK15564","GOA:Q1I9V9","InterPro:IPR000182","InterPro:IPR016181","UniProtKB/TrEMBL:Q1I9V9"],"inference":["ab initio prediction:AMIGene:2.0"],"locus_tag":["PSEEN2785"],"note":["Evidence 5 : No homology to any previously reported sequences"],"product":["hypothetical protein"],"protein_id":["CAK15564.1"],"transl_table":["11"],"translation":["MTSTTVLHKSVSTPVDIETRTDAFDYRPGHINDIPRLAQLFQSVYGQTTHPCQSPGYIRSSMDSGQQQWFVAELDSFLVGCCCVARRPWNQSWEMSHGVVHPAARRTGAISNLVRLGLERHRPHAMELGFYVTRNIASHALMKKIRPGVLVGHDGGPDKVDDIREYHLTALLPPAQEGFVHVAPGYAHNDVAGPIIARLYDALRLTPQPGAYPATCLSGPPGAQVHGPLRFNHEPGADALMVSGQVGDNPTQQATLQALTALLQRHPQVQYFSVHILADKLELLAGLVGLGFAITAYLPAWHLEGGVRYDCILLVFEVFADAPRSHGFDDEVAFFDQAYAKLADSLCAIALQ"]}},{"location":"[1122:2106](+)","type":"gene","qualifiers":{"locus_tag":["PSEEN2786"]}},{"location":"[1122:2106](+)","type":"CDS","qualifiers":{"codon_start":["1"],"db_xref":["EnsemblGenomes-Gn:PSEEN2786","EnsemblGenomes-Tr:CAK15565","GOA:Q1I9V8","InterPro:IPR005804","UniProtKB/TrEMBL:Q1I9V8"],"gene_functions":["biosynthetic-additional (rule-based-clusters) delta12_cd03507"],"gene_kind":["biosynthetic-additional"],"inference":["ab initio prediction:AMIGene:2.0"],"locus_tag":["PSEEN2786"],"note":["Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type e : enzyme"],"product":["putative fatty acid desaturase"],"protein_id":["CAK15565.1"],"sec_met_domain":["delta12_cd03507 (E-value: 4.5e-33, bitscore: 101.7, seeds: 49, tool: rule-based-clusters)"],"transl_table":["11"],"translation":["MTKDQWLVVRKQIPDGAKEPWTVMLWVADLLLLVLAWNFWLSESTALQVLGLLVAGLATVQLYLILHEALHGATSDNRRLNDIIGHFNGWLIALPFLVRRRFHMAHHTWTAHPLNDPENRGMIERFAVMTKKQERTLEFMWKHWLPMIAVNHFLLNWRAPFIARAQGDDSPRILKEIRFARLYLVGYGVVAAVAWAFGHLADLALFYLIIWLFLALIVELVNLPHHAEAPLLAKDGERLQFWEQDRVSHDCKSVPVWSRFVILNFNLHIVHHAFPSVPWYRLPEAHRMLHEQDGSPAASQLNEWDFSRKNRRRPLLKLMGHFFDHRA"]}}],"name":"BGC0002331","description":"Pseudomonas entomophila str. L48 chromosome,complete sequence","dbxrefs":[],"annotations":{"molecule_type":"DNA","topology":"circular","data_file_division":"BCT","date":"27-FEB-2015","accessions":["BGC0002331"],"keywords":[""],"source":"Pseudomonas entomophila L48","organism":"Pseudomonas entomophila L48","taxonomy":["Bacteria","Pseudomonadota","Gammaproteobacteria","Pseudomonadales","Pseudomonadaceae","Pseudomonas"],"references":[{"location":["[0:5888780]"],"authors":"Vodovar,N., Vallenet,D., Cruveiller,S., Rouy,Z., Barbe,V., Acosta,C., Cattolico,L., Jubin,C., Lajus,A., Segurens,B., Vacherie,B., Wincker,P., Weissenbach,J., Lemaitre,B., Medigue,C. and Boccard,F.","consrtm":"","title":"Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila","journal":"Nat. Biotechnol. 24 (6), 673-679 (2006)","medline_id":"","pubmed_id":"16699499","comment":"1. Centre de Genetique Moleculaire, Centre National de la Recherche Scientifique, 91198 Gif-sur-Yvette, France. 2. Genoscope, Centre National de Sequencage and CNRS-UMR8030, 2 rue Gaston Cremieux, 91057 Evry Cedex, France."},{"location":["[0:5888780]"],"authors":"Genoscope.","consrtm":"","title":"Direct Submission","journal":"Submitted (26-JUL-2006) Genoscope - Centre National de Sequencage : BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr)","medline_id":"","pubmed_id":"","comment":""}],"comment":"Annotation data relative to BLAST similarities, COG assignations,\nenzymatic function prediction (PRIAM software), TMHMM and SignalP\npredictions, and synteny results (Syntonizer software) are\navailable in EntomoScope database via the MaGe annotation system\nhttp://www.genoscope.cns.fr/agc/mage.\nEach annotation includes a confidence level as follow: 1 : Function\nexperimentally demonstrated in the studied organism 2a : Function\nof homologous gene experimentally demonstrated in an other organism\n2b : Function of strongly homologous gene\n3 : Function proposed based on presence of conserved amino acid\nmotif, structural feature or limited homology\n4 : Homologs of previously reported genes of unknown function 5 :\nNo homology to any previously reported sequences 6 : Doubtful CDS\n7 : Gene remnant."},"letter_annotations":{},"areas":[{"start":0,"end":2106,"products":["unknown"],"protoclusters":{},"candidates":[],"subregions":[{"start":0,"end":2106,"label":"BGC0002331","tool":"MIBiG"}]}],"gc_content":0.620607787274454,"modules":{"antismash.detection.sideloader":{"record_id":"BGC0002331","schema_version":1,"protoclusters":[],"subregions":[{"circular_origin":2106,"start":0,"end":2106,"label":"BGC0002331","details":{},"tool":{"name":"MIBiG","version":"4.0alpha","description":"","configuration":{}}}]},"antismash.detection.hmm_detection":{"record_id":"BGC0002331","schema_version":2,"enabled_types":["NI-siderophore","polyyne","RRE-containing","transAT-PKS","fungal-RiPP","benzoxazole","NRPS","melanin","tropodithietic-acid","leupeptin","hydroxytropolone","RaS-RiPP","microviridin","darobactin","terpene","lanthipeptide-class-ii","acyl_amino_acids","bottromycin","aminopolycarboxylic-acid","hydrogen-cyanide","cytokinin","sactipeptide","glycocin","redox-cofactor","atropopeptide","NAGGN","nitropropanoic_acid","deazapurine","guanidinotides","butyrolactone","phosphoglycolipid","furan","triceptide","lincosamides","mycosporine","thioamide-NRP","azole-containing-RiPP","T2PKS","CDPS","aminocoumarin","pyrrolidine","ladderane","T1PKS","aureonuclemycin","phenazine","oligosaccharide","2dos","other","RCDPS","PpyS-KS","transAT-PKS-like","lassopeptide","ectoine","hserlactone","lanthipeptide-class-iv","prodigiosin","resorcinol","hglE-KS","nucleoside","phosphonate-like","NRP-metallophore","isocyanide-nrp","polyhalogenated-pyrrole","thioamitides","indole","azoxy-dimer","lanthipeptide-class-v","ranthipeptide","opine-like-metallophore","methanobactin","amglyccycl","NRPS-like","lipolanthine","T3PKS","blactam","phosphonate","crocagin","spliceotide","arylpolyene","archaeal-RiPP","linaridin","lanthipeptide-class-iii","RiPP-like","cyclic-lactone-autoinducer","fungal_CDPS","proteusin","HR-T2PKS","PKS-like","PBDE","terpene-precursor","betalactone","isocyanide","PUFA","epipeptide","azoxy-crosslink","cyanobactin","lanthipeptide-class-i","NAPAA"],"rule_results":{"schema_version":4,"tool":"rule-based-clusters","cds_by_protocluster":[],"outside_protoclusters":[{"cds_name":"PSEEN2786","domains":[["delta12_cd03507",4.5e-33,101.7,49,"rule-based-clusters"]],"definition_domains":{}}],"multipliers":{"cutoff":1.0,"neighbourhood":1.0}},"strictness":"relaxed"},"antismash.detection.genefunctions":{"schema_version":2,"record_id":"BGC0002331","tools":{"extras":{"tool":"extras","best_hits":{},"function_mapping":{},"group_mapping":{},"subfunction_mapping":{}},"halogenases":{"tool":"halogenases","best_hits":{},"function_mapping":{},"group_mapping":{},"subfunction_mapping":{}},"mite":{"tool":"MITE","best_hits":{},"function_mapping":{},"group_mapping":{},"subfunction_mapping":{},"version":"1.3","url":"https://mite.bioinformatics.nl/repository/{accession}"},"resist":{"tool":"resist","best_hits":{},"function_mapping":{},"group_mapping":{},"subfunction_mapping":{}},"smcogs":{"tool":"smcogs","best_hits":{},"function_mapping":{},"group_mapping":{},"subfunction_mapping":{}}}},"antismash.detection.nrps_pks_domains":{"cds_results":{},"schema_version":4,"record_id":"BGC0002331"},"antismash.modules.cluster_compare":{"record_id":"BGC0002331","schema_version":1,"db_results":{"MIBiG":{"name":"MIBiG","by_region":{"1":{"RegionToRegion_RiQ":{"name":"RegionToRegion_RiQRiQ","scores_by_region":{"BGC0002331.2: 0-2106":1.0},"reference_regions":{"BGC0002331.2: 0-2106":{"accession":"BGC0002331.2","cdses":{"PSEEN2785":{"function":"other","components":{"modules":[],"secmet":[]},"location":"[0:1059](+)","draw_start":0,"draw_end":1059},"PSEEN2786":{"function":"biosynthetic-additional","components":{"modules":[],"secmet":["delta12_cd03507"]},"location":"[1122:2106](+)","draw_start":1122,"draw_end":2106}},"cds_mapping":{"1":"PSEEN2785","2":"PSEEN2786"},"start":0,"end":2106,"products":["other (other)"],"draw_end":2106,"organism":"Pseudomonas entomophila L48","description":"labradorin 1, pimprinine, labradorin 2","protoclusters":[]}},"details":{"kind":"RegionToRegion","details":[{"identity":1.0,"order":1.0,"component":1.0,"ref_id":"BGC0002331.2: 0-2106","final_score":1.0,"mode":"RiQ","hits":{"PSEEN2786":{"reference_record":"BGC0002331.2","reference_id":"2","query_cds_name":"PSEEN2786","percent_identity":100.0,"blast_score":672.0,"percent_coverage":100.0,"evalue":8.88e-248},"PSEEN2785":{"reference_record":"BGC0002331.2","reference_id":"1","query_cds_name":"PSEEN2785","percent_identity":100.0,"blast_score":727.0,"percent_coverage":100.0,"evalue":9.91e-269}}}]},"hits":{"BGC0002331.2: 0-2106":{"PSEEN2786":{"reference_record":"BGC0002331.2","reference_id":"2","query_cds_name":"PSEEN2786","percent_identity":100.0,"blast_score":672.0,"percent_coverage":100.0,"evalue":8.88e-248},"PSEEN2785":{"reference_record":"BGC0002331.2","reference_id":"1","query_cds_name":"PSEEN2785","percent_identity":100.0,"blast_score":727.0,"percent_coverage":100.0,"evalue":9.91e-269}}}},"ProtoToRegion_RiQ":{"name":"ProtoToRegion_RiQ","scores_by_region":{},"reference_regions":{},"details":{"kind":"ProtoToRegion","details":{}},"hits":{}}}},"url_format":"https://mibig.secondarymetabolites.org/go/{accession}.{version}","description":"The MIBiG database."}}},"antismash.modules.clusterblast":{"schema_version":2,"record_id":"BGC0002331","knowncluster":{"record_id":"BGC0002331","schema_version":5,"results":[{"region_number":1,"total_hits":1,"ranking":[[{"accession":"BGC0002331.2","cluster_label":"c1","proteins":["CAK15564.1","CAK15565.1"],"description":"labradorin 1/pimprinine/labradorin 2","cluster_type":"other:other","tags":["PSEEN2785","PSEEN2786"],"start":0,"end":0},{"hits":2,"core_gene_hits":0,"blast_score":1399.0,"synteny_score":1,"core_bonus":0,"similarity":100,"pairings":[["input|c1|0-1059|+|PSEEN2785|hypothetical",0,{"name":"PSEEN2785","genecluster":"BGC0002331.2_c1","start":1,"end":1059,"strand":"+","annotation":"hypothetical_protein","perc_ident":100,"blastscore":727,"perc_coverage":100.0,"evalue":9.91e-269,"locus_tag":"CAK15564.1","full_name":"BGC0002331.2_PSEEN2785"}],["input|c1|1122-2106|+|PSEEN2786|putative",1,{"name":"PSEEN2786","genecluster":"BGC0002331.2_c1","start":1123,"end":2106,"strand":"+","annotation":"putative_fatty_acid_desaturase","perc_ident":100,"blastscore":672,"perc_coverage":100.0,"evalue":8.88e-248,"locus_tag":"CAK15565.1","full_name":"BGC0002331.2_PSEEN2786"}]]}]],"prefix":"knownclusterblast"}],"proteins":[{"full_name":"BGC0002331.2_PSEEN2785","name":"CAK15564.1","locus_tag":"PSEEN2785","location":"1-1059","strand":"+","annotations":"hypothetical_protein","draw_start":1,"draw_end":1059},{"full_name":"BGC0002331.2_PSEEN2786","name":"CAK15565.1","locus_tag":"PSEEN2786","location":"1123-2106","strand":"+","annotations":"putative_fatty_acid_desaturase","draw_start":1123,"draw_end":2106}],"search_type":"knownclusterblast","data_version":"4.0","mibig_entries":{"1":{"PSEEN2785":[["CAK15564.1","hypothetical_protein","BGC0002331.2",1,"other:other",100.0,727.0,100.0,9.91e-269]],"PSEEN2786":[["CAK15565.1","putative_fatty_acid_desaturase","BGC0002331.2",1,"other:other",100.0,672.0,100.0,8.88e-248]]}}}},"antismash.modules.lanthipeptides":{"record_id":"BGC0002331","schema_version":5,"motifs":{},"new_cds_features":[],"protoclusters":{},"comparippson":{"db_results":[{"database":{"name":"antiSMASH-DB","version":"4.0","url":"https://antismash-db.secondarymetabolites.org/area.html?record=@accession@&start=@start@&end=@end@","id_format":"@accession@","description_format":"@type@: @locus@","fields":["accession","type","locus","start","end"],"dir_name":"asdb"},"hits":{},"aliases":{}},{"database":{"name":"MIBiG","version":"4.0","url":"https://mibig.secondarymetabolites.org/go/@accession@","id_format":"@accession@ (@locus@)","description_format":"@type@: @compounds@","fields":["accession","compounds","type","locus"],"dir_name":"mibig"},"hits":{},"aliases":{}}],"aliases":{}}},"antismash.modules.lassopeptides":{"record_id":"BGC0002331","schema_version":3,"motifs":{},"new_cds_features":[],"protoclusters":{},"comparippson_results":{"db_results":[{"database":{"name":"antiSMASH-DB","version":"4.0","url":"https://antismash-db.secondarymetabolites.org/area.html?record=@accession@&start=@start@&end=@end@","id_format":"@accession@","description_format":"@type@: @locus@","fields":["accession","type","locus","start","end"],"dir_name":"asdb"},"hits":{},"aliases":{}},{"database":{"name":"MIBiG","version":"4.0","url":"https://mibig.secondarymetabolites.org/go/@accession@","id_format":"@accession@ (@locus@)","description_format":"@type@: @compounds@","fields":["accession","compounds","type","locus"],"dir_name":"mibig"},"hits":{},"aliases":{}}],"aliases":{}}},"antismash.modules.nrps_pks":{"schema_version":3,"record_id":"BGC0002331","domain_predictions":{},"consensus":{},"consensus_transat":{},"region_predictions":{}},"antismash.modules.sactipeptides":{"record_id":"BGC0002331","schema_version":3,"motifs":{},"new_cds_features":[],"protoclusters":{},"comparippson_results":{"db_results":[{"database":{"name":"antiSMASH-DB","version":"4.0","url":"https://antismash-db.secondarymetabolites.org/area.html?record=@accession@&start=@start@&end=@end@","id_format":"@accession@","description_format":"@type@: @locus@","fields":["accession","type","locus","start","end"],"dir_name":"asdb"},"hits":{},"aliases":{}},{"database":{"name":"MIBiG","version":"4.0","url":"https://mibig.secondarymetabolites.org/go/@accession@","id_format":"@accession@ (@locus@)","description_format":"@type@: @compounds@","fields":["accession","compounds","type","locus"],"dir_name":"mibig"},"hits":{},"aliases":{}}],"aliases":{}}},"antismash.modules.t2pks":{"schema_version":3,"record_id":"BGC0002331","protocluster_predictions":{}},"antismash.modules.terpene":{"schema_version":1,"record_id":"BGC0002331","protocluster_predictions":{}},"antismash.modules.thiopeptides":{"record_id":"BGC0002331","schema_version":3,"protoclusters with motifs":[],"motifs":[],"cds_features":{},"comparippson":{"db_results":[{"database":{"name":"antiSMASH-DB","version":"4.0","url":"https://antismash-db.secondarymetabolites.org/area.html?record=@accession@&start=@start@&end=@end@","id_format":"@accession@","description_format":"@type@: @locus@","fields":["accession","type","locus","start","end"],"dir_name":"asdb"},"hits":{},"aliases":{}},{"database":{"name":"MIBiG","version":"4.0","url":"https://mibig.secondarymetabolites.org/go/@accession@","id_format":"@accession@ (@locus@)","description_format":"@type@: @compounds@","fields":["accession","compounds","type","locus"],"dir_name":"mibig"},"hits":{},"aliases":{}}],"aliases":{}}},"antismash.modules.tta":{"TTA codons":[],"schema_version":2,"record_id":"BGC0002331","gc_content":0.620607787274454,"threshold":0.65}}}],"timings":{"BGC0002331":{"antismash.detection.sideloader":0.16645050048828125,"antismash.detection.hmm_detection":1.2213289737701416,"antismash.detection.genefunctions":0.4223160743713379,"antismash.detection.nrps_pks_domains":0.04665684700012207,"antismash.modules.cluster_compare":2.25313663482666,"antismash.modules.clusterblast":1.6704540252685547,"antismash.modules.lanthipeptides":0.10907769203186035,"antismash.modules.lassopeptides":0.1054847240447998,"antismash.modules.nrps_pks":0.0000743865966796875,"antismash.modules.sactipeptides":0.10615801811218262,"antismash.modules.t2pks":0.00005221366882324219,"antismash.modules.terpene":0.00003528594970703125,"antismash.modules.thiopeptides":0.10285043716430664,"antismash.modules.tta":0.0002639293670654297}},"taxon":"bacteria","schema":4}