BGC0002379: MA026 biosynthetic gene cluster from Pseudomonas sp. RtIB026
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Location: 3,642,436 - 3,761,997 nt. (total: 119,562 nt).
This entry is originally from NCBI GenBank AP023348.1.

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core biosynthetic genes
additional biosynthetic genes
transport-related genes
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Gene details
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General
Compounds
Genes
Biosynthesis
History
NRPS/PKS domains
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0002379
Short description MA026 biosynthetic gene cluster from Pseudomonas sp. RtIB026
Status Quality: questionable
The quality level of this entry.

Status: active
The status of this entry.

Completeness: unknown
Whether the entry covers everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • NRPS (Type I)
Loci
AP023348.1
3642436 - 3761997
via
Compounds
  • MA026
Species Pseudomonas sp. RtIB026 [taxonomy]
References
Chemical products information
MA026 Evidence:
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Chemical database entries
NPAtlas
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • PRtIB026_33920
  • BCJ07527.1
  • macB2
 3642436 - 3644439 (-) macrolide export ATP-binding/permease protein MacB 2
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    • PRtIB026_33930
    • BCJ07528.1
    • syfC
    		 3644442 - 3645596 (-) hemolysin secretion protein D
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      • PRtIB026_33940
      • BCJ07529.1
      		 3645663 - 3655982 (-) hypothetical protein
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        • PRtIB026_33950
        • BCJ07530.1
        		 3655865 - 3656938 (-) hypothetical protein
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          • PRtIB026_33960
          • BCJ07531.1
          		 3656893 - 3660186 (-) hypothetical protein
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            • PRtIB026_33970
            • BCJ07532.1
            		 3660183 - 3677840 (-) hypothetical protein
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              • PRtIB026_33980
              • BCJ07533.1
              		 3677882 - 3685633 (-) hypothetical protein
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                • PRtIB026_33990
                • BCJ07534.1
                		 3685801 - 3686913 (+) hypothetical protein
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                  • PRtIB026_34000
                  • BCJ07535.1
                  		 3686923 - 3688986 (-) hybrid sensor histidine kinase/response regulator
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                    • PRtIB026_34010
                    • BCJ07536.1
                    • cdd
                    		 3688976 - 3689425 (-) tRNA-specific adenosine deaminase
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                      • PRtIB026_34020
                      • BCJ07537.1
                      		 3689592 - 3690257 (+) thiazole biosynthesis protein ThiJ
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                        • PRtIB026_34030
                        • BCJ07538.1
                        		 3690351 - 3691427 (-) 4-hydroxyphenylpyruvate dioxygenase
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                          • PRtIB026_34040
                          • BCJ07539.1
                          		 3691742 - 3693337 (+) cyclic diguanylate phosphodiesterase
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                            • PRtIB026_34050
                            • BCJ07540.1
                            		 3693595 - 3694260 (+) hypothetical protein
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                              • PRtIB026_34060
                              • BCJ07541.1
                              		 3694223 - 3695794 (-) hypothetical protein
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                                • PRtIB026_34070
                                • BCJ07542.1
                                		 3696055 - 3696636 (+) lysine transporter LysE
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                                  • PRtIB026_34080
                                  • BCJ07543.1
                                  		 3696906 - 3697682 (-) AraC family transcriptional regulator
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                                    • PRtIB026_34090
                                    • BCJ07544.1
                                    		 3697693 - 3698235 (-) transcriptional regulator
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                                      • PRtIB026_34100
                                      • BCJ07545.1
                                      		 3698389 - 3699171 (+) class II aldolase
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                                        • PRtIB026_34110
                                        • BCJ07546.1
                                        		 3699205 - 3700095 (+) dihydrodipicolinate synthase family protein
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                                          • PRtIB026_34120
                                          • BCJ07547.1
                                          		 3700180 - 3701319 (-) glycerate kinase
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                                            • PRtIB026_34130
                                            • BCJ07548.1
                                            		 3701421 - 3702524 (-) carbohydrate diacid regulator
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                                              • PRtIB026_34140
                                              • BCJ07549.1
                                              		 3702679 - 3704010 (+) MFS transporter
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                                                • PRtIB026_34150
                                                • BCJ07550.1
                                                		 3704158 - 3705267 (-) hypothetical protein
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                                                  • PRtIB026_34160
                                                  • BCJ07551.1
                                                  		 3705285 - 3706601 (-) amino acid permease
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                                                    • PRtIB026_34170
                                                    • BCJ07552.1
                                                    		 3706486 - 3706920 (+) hypothetical protein
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                                                      • PRtIB026_34180
                                                      • BCJ07553.1
                                                      		 3706950 - 3707747 (+) helix-turn-helix transcriptional regulator
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                                                        • PRtIB026_34190
                                                        • BCJ07554.1
                                                        • Ada
                                                        		 3707776 - 3709242 (-) DNA methylase
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                                                          • PRtIB026_34200
                                                          • BCJ07555.1
                                                          		 3709428 - 3710474 (-) hypothetical protein
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                                                            • PRtIB026_34210
                                                            • BCJ07556.1
                                                            		 3710512 - 3711153 (-) chitin-binding protein
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                                                              • PRtIB026_34220
                                                              • BCJ07557.1
                                                              		 3711504 - 3713195 (-) hypothetical protein
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                                                                • PRtIB026_34230
                                                                • BCJ07558.1
                                                                		 3713218 - 3713985 (-) ribonuclease T(2)
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                                                                  • PRtIB026_34240
                                                                  • BCJ07559.1
                                                                  		 3714140 - 3714322 (+) DUF2986 domain-containing protein
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                                                                    • PRtIB026_34250
                                                                    • BCJ07560.1
                                                                    		 3714364 - 3714828 (+) hypothetical protein
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                                                                      • PRtIB026_34260
                                                                      • BCJ07561.1
                                                                      		 3714830 - 3715651 (-) structural protein MipA
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                                                                        • PRtIB026_34270
                                                                        • BCJ07562.1
                                                                        		 3715809 - 3716105 (-) hypothetical protein
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                                                                          • PRtIB026_34280
                                                                          • BCJ07563.1
                                                                          		 3716394 - 3717728 (-) MFS transporter
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                                                                            • PRtIB026_34290
                                                                            • BCJ07564.1
                                                                            		 3717958 - 3719499 (-) AMP-dependent synthetase
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                                                                              • PRtIB026_34300
                                                                              • BCJ07565.1
                                                                              		 3719502 - 3720680 (-) acetyl-CoA acetyltransferase
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                                                                                • PRtIB026_34310
                                                                                • BCJ07566.1
                                                                                		 3720822 - 3721394 (+) LuxR family transcriptional regulator
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                                                                                  • PRtIB026_34320
                                                                                  • BCJ07567.1
                                                                                  		 3721443 - 3722087 (-) hypothetical protein
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                                                                                    • PRtIB026_34330
                                                                                    • BCJ07568.1
                                                                                    		 3722246 - 3723127 (+) transcriptional regulator
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                                                                                      • PRtIB026_34340
                                                                                      • BCJ07569.1
                                                                                      		 3723164 - 3723892 (-) hypothetical protein
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                                                                                        • PRtIB026_34350
                                                                                        • BCJ07570.1
                                                                                        		 3724050 - 3725495 (-) hypothetical protein
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                                                                                          • PRtIB026_34360
                                                                                          • BCJ07571.1
                                                                                          		 3725526 - 3725996 (-) hypothetical protein
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                                                                                            • PRtIB026_34370
                                                                                            • BCJ07572.1
                                                                                            		 3726010 - 3728244 (-) hypothetical protein
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                                                                                              • PRtIB026_34380
                                                                                              • BCJ07573.1
                                                                                              		 3728271 - 3729617 (-) hypothetical protein
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                                                                                                • PRtIB026_34390
                                                                                                • BCJ07574.1
                                                                                                		 3729914 - 3730426 (-) hypothetical protein
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                                                                                                  • PRtIB026_34400
                                                                                                  • BCJ07575.1
                                                                                                  		 3730547 - 3731716 (-) acyl-CoA dehydrogenase
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                                                                                                    • PRtIB026_34410
                                                                                                    • BCJ07576.1
                                                                                                    • pad
                                                                                                    		 3732042 - 3733529 (+) NAD-dependent phenylacetaldehyde dehydrogenase
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                                                                                                      • PRtIB026_34420
                                                                                                      • BCJ07577.1
                                                                                                      		 3733532 - 3734191 (+) helix-turn-helix transcriptional regulator
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                                                                                                        • PRtIB026_34430
                                                                                                        • BCJ07578.1
                                                                                                        		 3734268 - 3735086 (+) molybdenum cofactor biosynthesis protein F
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                                                                                                          • PRtIB026_34440
                                                                                                          • BCJ07579.1
                                                                                                          		 3735083 - 3735874 (+) 3-oxoacyl-ACP reductase
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                                                                                                            • PRtIB026_34450
                                                                                                            • BCJ07580.1
                                                                                                            		 3735871 - 3736638 (+) 3-ketoacyl-ACP reductase
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                                                                                                              • PRtIB026_34460
                                                                                                              • BCJ07581.1
                                                                                                              		 3736780 - 3738093 (+) hypothetical protein
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                                                                                                                • PRtIB026_34470
                                                                                                                • BCJ07582.1
                                                                                                                		 3738216 - 3739094 (-) hypothetical protein
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                                                                                                                  • PRtIB026_34480
                                                                                                                  • BCJ07583.1
                                                                                                                  		 3739269 - 3740159 (+) transporter
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                                                                                                                    • PRtIB026_34490
                                                                                                                    • BCJ07584.1
                                                                                                                    		 3740581 - 3741672 (+) hypothetical protein
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                                                                                                                      • PRtIB026_34500
                                                                                                                      • BCJ07585.1
                                                                                                                      		 3741888 - 3742076 (-) hypothetical protein
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                                                                                                                        • PRtIB026_34510
                                                                                                                        • BCJ07586.1
                                                                                                                        		 3742216 - 3742536 (-) UPF0145 protein
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                                                                                                                          • PRtIB026_34520
                                                                                                                          • BCJ07587.1
                                                                                                                          		 3742671 - 3744098 (+) MFS transporter
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                                                                                                                            • PRtIB026_34530
                                                                                                                            • BCJ07588.1
                                                                                                                            		 3744095 - 3744823 (+) hypothetical protein
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                                                                                                                              • PRtIB026_34540
                                                                                                                              • BCJ07589.1
                                                                                                                              		 3745039 - 3745740 (-) hypothetical protein
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                                                                                                                                • PRtIB026_34550
                                                                                                                                • BCJ07590.1
                                                                                                                                		 3745737 - 3745952 (-) hypothetical protein
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                                                                                                                                  • PRtIB026_34560
                                                                                                                                  • BCJ07591.1
                                                                                                                                  		 3745949 - 3746608 (-) hypothetical protein
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                                                                                                                                    • PRtIB026_34570
                                                                                                                                    • BCJ07592.1
                                                                                                                                    • toxC
                                                                                                                                    		 3746621 - 3748312 (-) hypothetical protein
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                                                                                                                                      • PRtIB026_34580
                                                                                                                                      • BCJ07593.1
                                                                                                                                      • ribA_2
                                                                                                                                      		 3748336 - 3748932 (-) GTP cyclohydrolase-2
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                                                                                                                                        • PRtIB026_34590
                                                                                                                                        • BCJ07594.1
                                                                                                                                        		 3748967 - 3749977 (-) hypothetical protein
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                                                                                                                                          • PRtIB026_34600
                                                                                                                                          • BCJ07595.1
                                                                                                                                          		 3750034 - 3750444 (-) hypothetical protein
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                                                                                                                                            • PRtIB026_34610
                                                                                                                                            • BCJ07596.1
                                                                                                                                            		 3750441 - 3750926 (-) hypothetical protein
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                                                                                                                                              • PRtIB026_34620
                                                                                                                                              • BCJ07597.1
                                                                                                                                              		 3750926 - 3751969 (-) O-methyltransferase
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                                                                                                                                                • PRtIB026_34630
                                                                                                                                                • BCJ07598.1
                                                                                                                                                		 3752280 - 3752924 (+) transcriptional regulator
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                                                                                                                                                  • PRtIB026_34640
                                                                                                                                                  • BCJ07599.1
                                                                                                                                                  		 3753045 - 3756242 (-) hypothetical protein
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                                                                                                                                                    • PRtIB026_34650
                                                                                                                                                    • BCJ07600.1
                                                                                                                                                    		 3756236 - 3758341 (-) hypothetical protein
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                                                                                                                                                      • PRtIB026_34660
                                                                                                                                                      • BCJ07601.1
                                                                                                                                                      		 3758266 - 3759381 (-) hypothetical protein
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                                                                                                                                                        • PRtIB026_34670
                                                                                                                                                        • BCJ07602.1
                                                                                                                                                        • syrR
                                                                                                                                                        		 3759799 - 3760551 (+) helix-turn-helix transcriptional regulator
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                                                                                                                                                          • PRtIB026_34680
                                                                                                                                                          • BCJ07603.1
                                                                                                                                                          		 3760612 - 3761997 (+) adeC/adeK/oprM family multidrug efflux complex outer membrane factor
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                                                                                                                                                            Biosynthesis information

                                                                                                                                                            Biosynthetic modules

                                                                                                                                                            Name
                                                                                                                                                            Unk01
                                                                                                                                                            Type
                                                                                                                                                            nrps-type1
                                                                                                                                                            Genes
                                                                                                                                                            PRtIB026_34650
                                                                                                                                                            Substrates
                                                                                                                                                            leucine (evidence: Structure-based inference [1])
                                                                                                                                                            Integrated Monomers
                                                                                                                                                            Domains
                                                                                                                                                            adenylation
                                                                                                                                                            Name
                                                                                                                                                            Unk02
                                                                                                                                                            Type
                                                                                                                                                            nrps-type1
                                                                                                                                                            Genes
                                                                                                                                                            PRtIB026_34640
                                                                                                                                                            Substrates
                                                                                                                                                            glutamic acid (evidence: Structure-based inference [1])
                                                                                                                                                            Integrated Monomers
                                                                                                                                                            Domains
                                                                                                                                                            adenylation
                                                                                                                                                            Name
                                                                                                                                                            Unk03
                                                                                                                                                            Type
                                                                                                                                                            nrps-type1
                                                                                                                                                            Genes
                                                                                                                                                            PRtIB026_33980
                                                                                                                                                            Substrates
                                                                                                                                                            glutamine (evidence: Structure-based inference [1])
                                                                                                                                                            Integrated Monomers
                                                                                                                                                            Domains
                                                                                                                                                            adenylation
                                                                                                                                                            Name
                                                                                                                                                            Unk04
                                                                                                                                                            Type
                                                                                                                                                            nrps-type1
                                                                                                                                                            Genes
                                                                                                                                                            PRtIB026_33980
                                                                                                                                                            Substrates
                                                                                                                                                            valine (evidence: Structure-based inference [1])
                                                                                                                                                            Integrated Monomers
                                                                                                                                                            Domains
                                                                                                                                                            adenylation
                                                                                                                                                            Name
                                                                                                                                                            Unk05
                                                                                                                                                            Type
                                                                                                                                                            nrps-type1
                                                                                                                                                            Genes
                                                                                                                                                            PRtIB026_33970
                                                                                                                                                            Substrates
                                                                                                                                                            leucine (evidence: Structure-based inference [1])
                                                                                                                                                            Integrated Monomers
                                                                                                                                                            Domains
                                                                                                                                                            adenylation
                                                                                                                                                            Name
                                                                                                                                                            Unk06
                                                                                                                                                            Type
                                                                                                                                                            nrps-type1
                                                                                                                                                            Genes
                                                                                                                                                            PRtIB026_33970
                                                                                                                                                            Substrates
                                                                                                                                                            glutamine (evidence: Structure-based inference [1])
                                                                                                                                                            Integrated Monomers
                                                                                                                                                            Domains
                                                                                                                                                            adenylation
                                                                                                                                                            Name
                                                                                                                                                            Unk07
                                                                                                                                                            Type
                                                                                                                                                            nrps-type1
                                                                                                                                                            Genes
                                                                                                                                                            PRtIB026_33970
                                                                                                                                                            Substrates
                                                                                                                                                            serine (evidence: Structure-based inference [1])
                                                                                                                                                            Integrated Monomers
                                                                                                                                                            Domains
                                                                                                                                                            adenylation
                                                                                                                                                            Name
                                                                                                                                                            Unk08
                                                                                                                                                            Type
                                                                                                                                                            nrps-type1
                                                                                                                                                            Genes
                                                                                                                                                            PRtIB026_33970
                                                                                                                                                            Substrates
                                                                                                                                                            valine (evidence: Structure-based inference [1])
                                                                                                                                                            Integrated Monomers
                                                                                                                                                            Domains
                                                                                                                                                            adenylation
                                                                                                                                                            Name
                                                                                                                                                            Unk09
                                                                                                                                                            Type
                                                                                                                                                            nrps-type1
                                                                                                                                                            Genes
                                                                                                                                                            PRtIB026_33970
                                                                                                                                                            Substrates
                                                                                                                                                            leucine (evidence: Structure-based inference [1])
                                                                                                                                                            Integrated Monomers
                                                                                                                                                            Domains
                                                                                                                                                            adenylation
                                                                                                                                                            Name
                                                                                                                                                            Unk10
                                                                                                                                                            Type
                                                                                                                                                            nrps-type1
                                                                                                                                                            Genes
                                                                                                                                                            PRtIB026_33970
                                                                                                                                                            Substrates
                                                                                                                                                            glutamine (evidence: Structure-based inference [1])
                                                                                                                                                            Integrated Monomers
                                                                                                                                                            Domains
                                                                                                                                                            adenylation
                                                                                                                                                            Name
                                                                                                                                                            Unk11
                                                                                                                                                            Type
                                                                                                                                                            nrps-type1
                                                                                                                                                            Genes
                                                                                                                                                            PRtIB026_33960
                                                                                                                                                            Substrates
                                                                                                                                                            leucine (evidence: Structure-based inference [1])
                                                                                                                                                            Integrated Monomers
                                                                                                                                                            Domains
                                                                                                                                                            adenylation
                                                                                                                                                            Name
                                                                                                                                                            Unk12
                                                                                                                                                            Type
                                                                                                                                                            nrps-type1
                                                                                                                                                            Genes
                                                                                                                                                            PRtIB026_33940
                                                                                                                                                            Substrates
                                                                                                                                                            leucine (evidence: Structure-based inference [1])
                                                                                                                                                            Integrated Monomers
                                                                                                                                                            Domains
                                                                                                                                                            adenylation
                                                                                                                                                            Name
                                                                                                                                                            Unk13
                                                                                                                                                            Type
                                                                                                                                                            nrps-type1
                                                                                                                                                            Genes
                                                                                                                                                            PRtIB026_33940
                                                                                                                                                            Substrates
                                                                                                                                                            glutamine (evidence: Structure-based inference [1])
                                                                                                                                                            Integrated Monomers
                                                                                                                                                            Domains
                                                                                                                                                            adenylation
                                                                                                                                                            Name
                                                                                                                                                            Unk14
                                                                                                                                                            Type
                                                                                                                                                            nrps-type1
                                                                                                                                                            Genes
                                                                                                                                                            PRtIB026_33940
                                                                                                                                                            Substrates
                                                                                                                                                            isoleucine (evidence: Structure-based inference [1])
                                                                                                                                                            Integrated Monomers
                                                                                                                                                            Domains
                                                                                                                                                            adenylation
                                                                                                                                                            Annotation changelog

                                                                                                                                                            Entry version: 2

                                                                                                                                                            Date
                                                                                                                                                            Changes
                                                                                                                                                            Submitters
                                                                                                                                                            Reviewers
                                                                                                                                                            2022-10-07
                                                                                                                                                            Added chemical structures for compounds: MA026.
                                                                                                                                                            • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                                                                                                                                            • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                                                                                                                                            2022-10-07
                                                                                                                                                            Added NPAtlas links to compounds: MA026.
                                                                                                                                                            • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                                                                                                                                            • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)

                                                                                                                                                            Entry version: 1

                                                                                                                                                            Date
                                                                                                                                                            Changes
                                                                                                                                                            Submitters
                                                                                                                                                            Reviewers
                                                                                                                                                            2022-09-15
                                                                                                                                                            Entry added
                                                                                                                                                            • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                                                                                                                                            • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                                                                                                                                            2022-09-15
                                                                                                                                                            Added NRP substrate specificities
                                                                                                                                                            • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                                                                                                                                            • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                                                                                                                                            Detailed domain annotation
                                                                                                                                                            Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
                                                                                                                                                            A domain glossary is available here, and an explanation of the visualisation is available here.
                                                                                                                                                            Selected features only
                                                                                                                                                            Show module domains
                                                                                                                                                            Similar known gene clusters from MIBiG 4.0
                                                                                                                                                            Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
                                                                                                                                                            Click on reference genes to show details of similarities to genes within the current region.
                                                                                                                                                            Click on an accession to open that entry in the MiBIG database.