BGC0002419: acidobactin A biosynthetic gene cluster from Acidovorax citrulli AAC00-1
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
View antiSMASH-generated output
Download Cluster GenBank file
Download region SVG
Location: 4,089,661 - 4,164,690 nt. (total: 75,030 nt).
This entry is originally from NCBI GenBank CP000512.1.

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
General
Compounds
Genes
Biosynthesis
History
KnownClusterBlast
NRPS/PKS domains
General information about the BGC

MIBiG accession | BGC0002419
Short description | acidobactin A biosynthetic gene cluster from Acidovorax citrulli AAC00-1
Status | Quality: questionable The quality level of this entry. Status: active The status of this entry. Completeness: unknown Whether the entry covers everything needed for the pathway producing the compound(s)

Biosynthetic class(es)

- NRPS (Type I)
- PKS (Unknown)

Loci
CP000512.1
4108803 - 4146830
via
Compounds

- acidobactin A
- acidobactin B

Species Acidovorax citrulli AAC00-1 [taxonomy]
References

- [1] An automated Genomes-to-Natural Products platform (GNP) for the discovery of modular natural products. Johnston CW et al., Nat Commun (2015) PMID:26412281

Chemical products information
acidobactin A Evidence:
Copy SMILES
Chemical database entries
NPAtlas
acidobactin B Evidence:
Copy SMILES
Chemical database entries
NPAtlas
List of genes involved in compound(s) production

Identifiers | Position | Product | Functions | Evidence | Extra
--- | --- | --- | --- | --- | ---
Aave_3722 ABM34269.1 | 4108803 - 4109576 (-) | 4'-phosphopantetheinyl transferase |  |  | copy AA seq copy Nt seq
Aave_3723 ABM34270.1 | 4109661 - 4111019 (-) | L-lysine 6-monooxygenase (NADPH) |  |  | copy AA seq copy Nt seq
Aave_3724 ABM34271.1 | 4111086 - 4112780 (-) | cyclic peptide transporter |  |  | copy AA seq copy Nt seq
Aave_3725 ABM34272.1 | 4112983 - 4113813 (+) | ferric iron reductase protein FhuF |  |  | copy AA seq copy Nt seq
Aave_3726 ABM34273.1 | 4113820 - 4114761 (+) | conserved hypothetical protein |  |  | copy AA seq copy Nt seq
Aave_3727 ABM34274.1 | 4114782 - 4115882 (+) | conserved hypothetical protein |  |  | copy AA seq copy Nt seq
Aave_3728 ABM34275.1 | 4115994 - 4118195 (+) | TonB-dependent siderophore receptor |  |  | copy AA seq copy Nt seq
Aave_3729 ABM34276.1 | 4118230 - 4122336 (-) | amino acid adenylation domain protein |  |  | copy AA seq copy Nt seq
Aave_3730 ABM34277.1 | 4122364 - 4130319 (-) | amino acid adenylation domain protein |  |  | copy AA seq copy Nt seq
Aave_3731 ABM34278.1 | 4130352 - 4133744 (-) | amino acid adenylation domain protein |  |  | copy AA seq copy Nt seq
Aave_3732 ABM34279.1 | 4133746 - 4138353 (-) | beta-ketoacyl synthase |  |  | copy AA seq copy Nt seq
Aave_3733 ABM34280.1 | 4138362 - 4143701 (-) | amino acid adenylation domain protein |  |  | copy AA seq copy Nt seq
Aave_3734 ABM34281.1 | 4143698 - 4144690 (-) | Taurine catabolism dioxygenase TauD/TfdA |  |  | copy AA seq copy Nt seq
Aave_3735 ABM34282.1 | 4144786 - 4145562 (-) | Thioesterase |  |  | copy AA seq copy Nt seq
Aave_3736 ABM34283.1 | 4145568 - 4145855 (-) | MbtH domain protein |  |  | copy AA seq copy Nt seq
Aave_3737 ABM34284.1 | 4146297 - 4146830 (-) | RNA polymerase, sigma-24 subunit, ECF subfamily |  |  | copy AA seq copy Nt seq

Biosynthesis information

No biosynthesis information available for this record.

Annotation changelog

#### Entry version: 2

Date
Changes
Submitters
Reviewers
2022-10-07
Added chemical structures for compounds: acidobactin B, acidobactin A.

- (ID: AAAAAAAAAAAAAAAAAAAAAAAA)

- (ID: AAAAAAAAAAAAAAAAAAAAAAAA)

2022-10-07
Added NPAtlas links to compounds: acidobactin B, acidobactin A.

- (ID: AAAAAAAAAAAAAAAAAAAAAAAA)

- (ID: AAAAAAAAAAAAAAAAAAAAAAAA)

#### Entry version: 1

Date
Changes
Submitters
Reviewers
2022-09-15
Entry added

- (ID: AAAAAAAAAAAAAAAAAAAAAAAA)

- (ID: AAAAAAAAAAAAAAAAAAAAAAAA)

Similar known clusters from MIBiG 4.0
Shows clusters from the MIBiG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Detailed help and explanations are available here.
Click on reference genes to show details of similarities to genes within the current region.
Double click on a reference drawing to reverse the display of the genes.
Click on an accession to open that entry in the MIBiG database.
Location:
Identifier
Identity
Coverage
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A domain glossary is available here, and an explanation of the visualisation is available here.
Selected features only
Show module domains