LOCUS       BGC0002469              6373 bp    DNA     linear   BCT 10-SEP-2019
DEFINITION  Shewanella woodyi ATCC 51908 chromosome, complete genome.
ACCESSION   BGC0002469
VERSION     BGC0002469
KEYWORDS    .
SOURCE      Shewanella woodyi ATCC 51908
  ORGANISM  Shewanella woodyi ATCC 51908
            Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales;
            Shewanellaceae; Shewanella.
COMMENT     URL -- http://www.jgi.doe.gov
            JGI Project ID: 4002759
            Source DNA and bacteria available from Jian-Shen Zhao
            (Jian-Shen.Zhao@cnrc-nrc.gc.ca)
            Contacts: Jian-Shen Zhao (Jian-Shen.Zhao@cnrc-nrc.gc.ca)
            Paul Richardson (microbes@cuba.jgi-psf.org)
            Quality assurance done by JGI-Stanford
            Annotation done by JGI-ORNL and JGI-PGF
            Finishing done by JGI-LANL
            Finished microbial genomes have been curated to close all gaps with
            greater than 98% coverage of at least two independent clones. Each
            base pair has a minimum q (quality) value of 30 and the total error
            rate is less than one per 50000.
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. it is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfmpageID=10506376).
            ##antiSMASH-Data-START##
            Version      :: False
            Run date     :: 2024-10-17 17:47:06
            NOTE: This is a single region extracted from a larger record!
            Orig. start  :: 825671
            Orig. end    :: 832044
            ##antiSMASH-Data-END##
FEATURES             Location/Qualifiers
     CDS             1..2778
                     /codon_start=1
                     /db_xref="InterPro:IPR007310"
                     /gene_functions="biosynthetic (rule-based-clusters)
                     NI-siderophore: IucA_IucC"
                     /gene_functions="biosynthetic-additional (smcogs)
                     SMCOG1203:putative siderophore biosynthesis protein (Score:
                     262.6; E-value: 1.1e-79)"
                     /gene_kind="biosynthetic"
                     /locus_tag="Swoo_0585"
                     /note="PFAM: IucA/IucC family protein; KEGG: vfi:VFA0161
                     aerobactin siderophore biosynthesis protein IucA"
                     /product="IucA/IucC family protein"
                     /protein_id="ACA84881.1"
                     /sec_met_domain="IucA_IucC (E-value: 2.4e-62, bitscore:
                     198.3, seeds: 168, tool: rule-based-clusters)"
                     /transl_table=11
                     /translation="MLVNEQSERVDLAAQCFFNGLLKEFHGWKVNEQQRLVSIDLPDSG
                     VELQLSYEHLSSCGPHKFIFPIRYLDGKSRGSLSFERALSLIINESEIVGELSDSARDL
                     FKDRVIQSAANTANGVTVRFDDLPHLYNQKLNFIEAEQALLVGHNMHPAPKSRSGFTGA
                     DTCYAPESGESFGLHWFAVHQTAWQGEIYGGEVDAAIASIIEDLKLDIKLDIRPIPSGY
                     QLLPMHPWQVKVLKERDDIAHLFASDLILDLGIHGDGWRATTSLRAIYHPDCRFMLKYS
                     LSVKLTNSVRHLSVKEVRRGMLLEKILDADKGLELQQRYPSMTIMREPGFVALQNSEGE
                     AIEESLFAFRVNSFWKQSERESLVLASLTQADPMGGNSALANMVLSRANERKESTSITA
                     QQWFQGYLEQVLEPLVTARSDYGVIFLAHQQNIVVDIQDRLPVGLFYRDCQGTGFTCAA
                     QECFPEQLSEAAPENFMSREIVDPFISYYLIFNSSFSVISALASAGLVDESVLLNQLRL
                     FMGHLKQKGYKDSGFVDYLLSSETLIFKGNFFVYLSNINENSIEDPSEIYQSIPNPLYV
                     KSGTNALIKRLPDNSLIGFSQSGSSQANAISIETPETSCEVSLTELDGLRLIQPSGLSA
                     NFLRLSYLQMLSLIEHAMFAKEVKGVSISLSHWDQLCFAKPPRWICVDDNALFIGVSQF
                     EQNPDLWLLSPLSRNLASPECFIKNDEVTYPLRPNHPQGVFFRRFSYELGLEFSLRLID
                     PQADLDLFHQWMNQPRVADFWELDKPKEELLEYLQTTIALKHQFPVMAMFNGNAFGYFE
                     YYWAKEDRLGPYYEADDYDRGVHLLIGNDNYLGTQYWKVWGNYFIQYIFLADSRTKHLV
                     GEPRVDNKNIIKLWQHFALEKVKEFHFPHKHAALVMGKRERFFEKMLRHYQGKN"
     subregion       1..6373
                     /aStool="mibig"
                     /contig_edge="False"
                     /label="other"
                     /subregion_number="1"
                     /tool="antismash"
     region          1..6373
                     /contig_edge="False"
                     /product="unknown"
                     /region_number="1"
                     /subregion_numbers="1"
                     /tool="antismash"
     gene            1..2778
                     /locus_tag="Swoo_0585"
     gene            2778..4112
                     /locus_tag="Swoo_0586"
     CDS             2778..4112
                     /EC_number="1.14.13.59"
                     /codon_start=1
                     /gene_functions="biosynthetic-additional (smcogs)
                     SMCOG1080:lysine/ornithine N-monooxygenase (Score: 342.5;
                     E-value: 5.1e-104)"
                     /gene_kind="biosynthetic-additional"
                     /locus_tag="Swoo_0586"
                     /note="KEGG: vfi:VFA0164 L-lysine 6-monooxygenase"
                     /product="L-lysine 6-monooxygenase (NADPH)"
                     /protein_id="ACA84882.1"
                     /transl_table=11
                     /translation="MNKDMKHFDLFGIGIGPFNLSIAALSQGINGLNTAFADAHKSMTW
                     HPGLLLNEARMQTSPLKDMVTAVEPTNPLSFLSYLVNKRKIYAYMAAQMDTISRIEFAD
                     YLAWVASRVDNLIFDNPVDAVEFSGDKFLIHSKQGIFTSQHICLGTGKVAHLPACVKPY
                     MGPKCLHASRLALKDRSYQGKTVAVVGGGQTGADVFLNLLQRQWGEPTRVIWISRRPNF
                     QALDEGVFTDQYFTPGYGEIFYGLSEQVKSQEVKHQKLSSDGITSASLNEIYQHLYQER
                     FIKGDKAGDKWNLRPHRTLTKMREQGDKFELTLRNGITNCDESLEVDELILCTGFESQI
                     PSYLAPIKQKLDIDRYGQFNLNREFSVAWDGPQTNKVYAVNAGIHSHGILEPQLSLAAW
                     RSAVIINDMLGHNHFDLSLEESIIDWGQEAPVLNKESIIKHQGIK"
     sig_peptide     4112..4186
                     /locus_tag="Swoo_0587"
                     /note="Signal predicted by SignalP 3.0 HMM (Signal peptide
                     probability 1.000) with cleavage site probability 0.995 at
                     residue 25"
     gene            4112..6373
                     /locus_tag="Swoo_0587"
     CDS             4112..6373
                     /codon_start=1
                     /db_xref="InterPro:IPR000531"
                     /db_xref="InterPro:IPR012910"
                     /gene_functions="transport (smcogs)
                     SMCOG1082:TonB-dependent siderophore receptor family
                     (Score: 163; E-value: 2.6e-49)"
                     /gene_kind="transport"
                     /locus_tag="Swoo_0587"
                     /note="PFAM: TonB-dependent receptor; TonB-dependent
                     receptor plug; KEGG: noc:Noc_1820 TonB-dependent receptor"
                     /product="TonB-dependent receptor"
                     /protein_id="ACA84883.1"
                     /transl_table=11
                     /translation="MSKFKLAPISTAILLSTLGGAAWAESDQLNVDNQEMEVINVTAKP
                     FDTPVSSLPGTVQIIDQEAIAAQISVSADLSGLLANLVPSYGPETQMMSSTYQGFRGRK
                     AIVMIDGVIVSNTLRDTSRVLSSISVENIERIEVIQGASAVYGNGESAGVINLITYQAS
                     EEGIAFWSQAKIDGSIHDSDSIGYQLSQRVSGTQGQFNYLAQLNWRDSGTLFDGEGTQI
                     PSDPAGRGGQGELEDLDALVKLGYLFDDDSSMALNLHTRKLENQLSFARKTVFDETVVV
                     DTSKPFTGDAPYSENKYLQFTYHAPSLGGHQVNIELSASESENTQANKVLTQSKKQAAR
                     IAAQPLRLPREQDRLTYGIDYQVDKTKQISAKGICEICNVEQTNIAPFAEYEFNQDDFM
                     LQFGVRYEHFDLDVPDYLATGRYGSTPYSGQTIEGGSLNYSKPVFNLGGVYRFETTEVY
                     ASFSQGYGLGDLRRLRSIDVPEVEQYDDKMKPTEANNFDLGYRGQFDSFSFDIGLFYTQ
                     SERAQSYVDILDQVIYGTLATIDPRLVYDQSNTLNPDAIDAVVSRDEKTYGLELISSYA
                     INDTFTFGGNLSYTQGEYRHPTKGWVEMNNARISPMKANLFLDMNLNDEFGGLLQVNYV
                     GSRDEGTEIDLPLPQNGMWGTFNGYSYYNAPTESYTTVDLSLFYQSHFGRFTLGIKNLF
                     DKVYRPAYAQMGSGSVYGGIDLPSDPTLDQLEGLVRDYAFKDSYNAQGTTFTLGYQVYY
                     "
ORIGIN
        1 atgttagtca acgagcaaag tgagcgtgtc gatctggcgg ctcaatgttt ttttaatggg
       61 ctacttaaag agtttcatgg ctggaaagtg aatgagcaac agcgacttgt ctctatcgac
      121 ttgcctgata gtggtgttga gttacagctc tcatatgaac acctttccag ttgcggcccc
      181 cacaagttta tcttccctat tcgttattta gatggaaaaa gcagaggttc gctgagcttt
      241 gagcgtgcgc tatctttaat catcaatgag tcggagattg tcggtgaact gtccgatagt
      301 gcaagagatc tgtttaaaga tcgtgtgatc cagagtgcgg caaataccgc taatggggtc
      361 acagtaaggt ttgatgatct cccgcatctc tataaccaaa agctgaattt tattgaagct
      421 gaacaggcac tgctggtggg acacaatatg caccctgctc ctaagagtcg tagcgggttt
      481 actggtgccg acacttgtta tgctccagag agcggtgaga gttttggcct tcactggttt
      541 gccgttcatc aaacagcctg gcagggcgag atctacggtg gtgaggttga cgctgcaatc
      601 gcctcgatta ttgaagacct taagttagat atcaagctag atattaggcc tattccctct
      661 ggttatcagc tacttcccat gcatccttgg caagtcaaag tgcttaaaga gcgagacgat
      721 attgcacatc tgtttgcatc cgatctcatt ttagatctgg gtattcatgg ggatggttgg
      781 cgagccacca catctttacg agctatctac cacccagatt gtcgctttat gctcaaatat
      841 tcattgagtg tcaagctgac taattcagtg cgccacctct cggtgaaaga ggtgcgccgt
      901 ggcatgttgt tggaaaaaat cttagacgcc gataaagggc ttgagttgca acagcgctac
      961 ccaagtatga ccataatgcg cgagccaggg tttgtggcac tgcaaaacag cgagggagag
     1021 gcgattgagg agagtctatt tgccttcaga gtgaacagtt tttggaagca gtcagagcgt
     1081 gaatctttgg tgctagcgag cttgactcaa gccgatccta tgggtggaaa tagcgcattg
     1141 gctaacatgg tgttgagtcg agccaatgag cgaaaagagt ctacctcaat cacggctcag
     1201 cagtggtttc aaggatattt ggagcaagta ttagagccct tagtgacggc gcgaagtgac
     1261 tacggcgtaa tatttctagc tcatcagcaa aatatcgtgg tggatattca agacaggctt
     1321 cctgtcggcc tcttctaccg agattgtcag ggaaccggct ttacctgtgc ggctcaagag
     1381 tgtttccccg agcagttaag cgaagccgcg cctgaaaact ttatgtcccg cgaaatagtg
     1441 gatcctttta tcagttacta cctgatattt aatagtagtt tcagcgtgat cagtgcccta
     1501 gcatcggctg ggttagtcga tgagtcggta ctgcttaacc agctaagact gtttatgggg
     1561 catctaaagc agaaaggtta caaggattcc ggctttgttg attatcttct aagctctgaa
     1621 actttgatat ttaaaggtaa tttctttgtc tacctgagca atattaatga aaacagcata
     1681 gaagatccca gcgagatcta ccagagcatc cccaaccctc tctatgttaa atcaggcacc
     1741 aacgctttga ttaaacggct tcccgataat agcttgatcg gttttagcca gagtggttct
     1801 agccaagcca atgctatcag tatcgagaca cctgaaacct catgtgaagt cagcttgact
     1861 gaactcgatg gcttaaggct tatacagccg agcggactta gcgctaactt cttacggctc
     1921 tcctatctgc agatgctatc actgattgaa catgcgatgt ttgccaaaga ggttaaaggg
     1981 gtcagtatct cgctatctca ttgggaccaa ctctgttttg ctaagcctcc tcgatggatc
     2041 tgtgttgatg ataatgcgct gtttattggt gtttctcagt ttgagcagaa tccagatctc
     2101 tggctgttat ctccgctatc acgcaatttg gcctcacctg agtgctttat taaaaatgat
     2161 gaggtcacat atcccttaag acccaatcat ccacaaggtg ttttcttccg tcgttttagt
     2221 tatgagctgg gtctggagtt tagtctgcga cttatcgatc cacaggcaga tcttgatctc
     2281 ttccatcaat ggatgaatca gccgagagtg gccgattttt gggagcttga taagcctaaa
     2341 gaggagctac ttgagtactt gcaaacaacc atcgcgctca agcatcagtt tcctgtgatg
     2401 gcgatgttca atggtaatgc ctttggttat ttcgaatatt actgggcaaa agaggacaga
     2461 cttggcccct actacgaagc cgatgattac gatcgtggcg ttcatctgtt gatcggcaat
     2521 gataattacc ttggtaccca atattggaaa gtatggggta actactttat tcaatacatt
     2581 tttctcgctg atagtcgtac aaaacacctt gttggcgaac cgagagtcga taacaaaaat
     2641 attatcaagc tatggcagca ctttgcctta gagaaggtga aagagtttca ttttccccat
     2701 aaacatgcag ctttagttat ggggaaacga gagcgctttt ttgaaaaaat gttacgtcac
     2761 tatcagggga aaaactgatg aataaggata tgaaacactt tgatcttttt ggtataggca
     2821 tcgggccttt taacttgagt attgccgcgc tgtctcaagg cattaatggg ttaaatacag
     2881 cttttgccga tgctcataag tcgatgactt ggcaccctgg tttgctgctc aatgaagcga
     2941 gaatgcagac cagtccattg aaggatatgg tgacggctgt tgagccgacc aatccgctct
     3001 cgtttctctc ttacctagtg aataaacgca aaatctacgc ctatatggcg gcccagatgg
     3061 acaccatcag ccgaatagag tttgccgatt atttagcttg ggtagccagt agagtggata
     3121 acctgatctt cgataacccc gtggatgcag tggagttttc tggtgataaa tttctaatcc
     3181 atagcaagca ggggatattt accagccagc atatctgcct aggaaccggc aaggttgctc
     3241 acctgccagc atgtgttaag ccctatatgg gccctaaatg tctgcatgct agtcgcctag
     3301 cgttaaaaga tcgcagctac caagggaaaa ccgtggctgt ggtcggtggt ggtcaaactg
     3361 gcgccgatgt ttttctaaac ctgttgcagc gtcagtgggg ggaaccaaca cgggttatct
     3421 ggatctcgag acggcctaat tttcaagcct tggatgaggg ggtctttacc gatcagtact
     3481 ttactcctgg ttatggcgag atcttctatg gattgagtga acaagttaaa agccaagagg
     3541 tgaaacatca gaagctctcg agtgatggca ttaccagtgc atctttgaat gagatctatc
     3601 agcatctcta tcaagagcgg tttattaagg gagacaaggc gggagataaa tggaacctgc
     3661 gcccccacag aacgctaaca aagatgcgtg agcaaggtga caaatttgag ctgaccttaa
     3721 ggaacgggat cacaaattgt gatgagtcac ttgaggtgga tgagttgatc ctctgtaccg
     3781 gttttgaatc gcagatccca agttatctgg cgccgattaa gcagaaacta gatatcgacc
     3841 gctatggtca atttaatcta aatcgcgagt tttctgttgc ttgggatgga ccacaaacca
     3901 ataaagtcta tgcggttaat gcgggtattc atagccatgg aattttagag cctcagctta
     3961 gcctagccgc ttggcgtagc gccgtcatca tcaatgacat gcttgggcat aaccattttg
     4021 acctttcatt agaggagtca attatagatt ggggccagga ggctccagtt ttaaacaaag
     4081 aaagtattat taaacatcag ggaataaaat agtgtctaag ttcaagttag ccccaatatc
     4141 gaccgccatt ttgctttcca cactgggtgg agctgcatgg gctgagagtg accaacttaa
     4201 tgtcgataat caagagatgg aggtgattaa tgtcaccgct aaacctttcg ataccccagt
     4261 atcttcactg ccaggaacgg ttcagatcat tgatcaggag gcgattgctg cacagatcag
     4321 tgtaagtgcc gatctgtctg gattgctagc aaacctagtg ccgagctacg gccctgaaac
     4381 tcagatgatg tccagtacat atcaggggtt tcgtggccga aaagcgatag tgatgatcga
     4441 cggggtcatt gtgtcgaata cgctacgtga taccagtcgg gtgctctcat ctatctcggt
     4501 ggagaatatc gaacgtatcg aggtgataca gggggcgagc gctgtatatg gaaatggtga
     4561 atctgctggt gtgatcaacc ttatcaccta tcaggcaagt gaagagggga tcgcattttg
     4621 gagccaagca aaaattgatg gctctatcca tgactctgat tcaatcggtt accaactaag
     4681 ccagcgagtc tctggcactc aaggtcaatt taactatctg gctcagctta actggcgaga
     4741 ttcaggcacc ctatttgatg gtgaaggtac tcaaattccc tcagatccag cgggacgtgg
     4801 tgggcagggg gagctagaag acctcgacgc cttagttaaa cttggttatc tatttgatga
     4861 tgactcaagc atggcgctga acctgcacac tagaaagctt gaaaatcaac tgagctttgc
     4921 acgtaaaaca gtgtttgatg aaaccgttgt ggttgatacc tctaaacctt ttactggtga
     4981 tgcgccctat agcgaaaaca agtatctgca gtttacctat catgctccct cgttaggtgg
     5041 ccatcaggtg aatatcgaac tgagtgccag cgaaagtgaa aatactcaag caaacaaggt
     5101 gctgactcag tctaaaaagc aggctgcacg tatcgcagcc cagcctctaa ggttacctag
     5161 ggagcaagac cgactcacct atggtatcga ttatcaagtg gataaaacca aacagatcag
     5221 cgcgaaaggg atctgcgaga tctgtaatgt cgagcagacc aacatcgccc cttttgcaga
     5281 gtatgagttt aaccaagatg actttatgct gcagttcggc gtccgttatg agcattttga
     5341 tctcgatgtg ccagattatc tggctacagg tagatatgga tctacaccat acagtggcca
     5401 aaccatcgag ggtggtagct taaattacag taagcctgta tttaatttgg gtggggttta
     5461 tcgatttgaa accacagaag tttatgcctc attttcacaa gggtatggac ttggcgatct
     5521 gcgtcgactt cgttctatag atgtgcctga ggttgagcaa tatgatgaca agatgaaacc
     5581 aaccgaagcc aataattttg acttgggtta tcggggacag ttcgatagtt tcagtttcga
     5641 tataggcctt ttctatactc aatctgaacg tgcccagagt tatgtcgata tattggatca
     5701 ggtgatctac ggcactttag ccacgataga ccctcggctg gtttatgatc aatctaacac
     5761 actaaatcct gatgctattg atgccgtggt gagccgcgat gagaagacct acgggcttga
     5821 gcttatctca tcctatgcga ttaatgacac ctttaccttt ggcggaaatt tgagttatac
     5881 ccaaggtgaa tatcgtcacc cgacaaaggg ttgggtggag atgaacaacg cccgcattag
     5941 cccgatgaaa gccaatctat ttctcgatat gaacttgaac gatgagtttg gtggtctgtt
     6001 acaggtcaac tatgtaggct cacgagatga aggtacagag atagatctgc cactgccgca
     6061 aaacggtatg tggggaacct ttaatggcta tagctattac aacgcaccta ccgagagtta
     6121 taccacggtg gatctcagcc tcttctatca aagtcatttt ggtcgattta ctttagggat
     6181 caaaaacctg tttgataagg tttatcgccc agcctatgcc cagatgggga gtggtagtgt
     6241 gtatggcggc atcgacttgc caagcgatcc tactttagat cagctagaag gcttagtgcg
     6301 tgactatgcg ttcaaagaca gctacaacgc tcaaggaacg accttcacct taggttatca
     6361 agtttattat taa
//
