BGC0002493: parabactin biosynthetic gene cluster from Paracoccus denitrificans PD1222
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
View antiSMASH-generated output
Download Cluster GenBank file
Download region SVG
Location: 2,359,864 - 2,405,957 nt. (total: 46,094 nt).
This entry is originally from NCBI GenBank CP000489.1.

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset zoomreset view
zoomzoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
General
Compounds
Genes
Biosynthesis
History
Tailoring
KnownClusterBlast
NRPS/PKS domains
General information about the BGC
MIBiG accession BGC0002493
Short description parabactin biosynthetic gene cluster from Paracoccus denitrificans PD1222
Status Quality: questionable
The quality level of this entry.

Status: active
The status of this entry.

Completeness: unknown
Whether the entry covers everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • NRPS (Type I)
Loci
CP000489.1
2379882 - 2385957
via
Compounds
  • parabactin
Species Paracoccus denitrificans PD1222 [taxonomy]
References
Chemical products information
parabactin Evidence:
Copy SMILES
Chemical database entries
NPAtlas
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • Pden_2382
  • ABL70472.1
 2379864 - 2381087 (+) isochorismate synthase
    copy AA seq
    copy Nt seq
    • Pden_2383
    • ABL70473.1
    		 2381087 - 2381743 (+) Isochorismatase
      copy AA seq
      copy Nt seq
      • Pden_2384
      • ABL70474.1
      		 2381734 - 2382504 (+) short-chain dehydrogenase/reductase SDR
        copy AA seq
        copy Nt seq
        • Pden_2386
        • ABL70475.1
        		 2382798 - 2384420 (-) 2,3-dihydroxybenzoate-AMP ligase
          copy AA seq
          copy Nt seq
          • Pden_2387
          • ABL70476.1
          		 2384608 - 2385957 (+) condensation domain protein
            copy AA seq
            copy Nt seq
            Biosynthesis information

            No biosynthesis information available for this record.

            Annotation changelog

            Entry version: 2

            Date
            Changes
            Submitters
            Reviewers
            2022-10-07
            Added chemical structures for compounds: parabactin.
            • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
            • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
            2022-10-07
            Added NPAtlas links to compounds: parabactin.
            • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
            • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)

            Entry version: 1

            Date
            Changes
            Submitters
            Reviewers
            2022-09-15
            Entry added
            • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
            • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
            Tailoring functions
            Tailoring enzymes detected in this region
            Oxidoreductases: dehydrogenase
            Pden_2384: short-chain dehydrogenase/reductase SDR
            smcogs
            SMCOG1001: short-chain dehydrogenase/reductase SDR
            Hydrolases: hydrolase
            Pden_2383: isochorismatase
            smcogs
            SMCOG1027: isochorismatase
            Isomerases: isomerase
            Pden_2382: isochorismate synthase
            smcogs
            SMCOG1018: isochorismate synthase
            Ligases: ligase
            Pden_2386: AMP-dependent synthetase and ligase
            smcogs
            SMCOG1002: AMP-dependent synthetase and ligase
            Pden_2387: condensation domain-containing protein
            smcogs
            SMCOG1127: condensation domain-containing protein
            Similar known clusters from MIBiG 4.0
            Shows clusters from the MIBiG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
            Detailed help and explanations are available here.

            Click on reference genes to show details of similarities to genes within the current region.
            Double click on a reference drawing to reverse the display of the genes.

            Click on an accession to open that entry in the MIBiG database.


            Location:

            Identifier
            Identity
            Coverage
            Detailed domain annotation
            Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
            A domain glossary is available here, and an explanation of the visualisation is available here.
            Selected features only
            Show module domains