BGC0002571: pyoverdine DC3000 biosynthetic gene cluster from Pseudomonas syringae pv. tomato str. DC3000
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Location: 4,022,817 - 4,090,447 nt. (total: 67,631 nt).
This entry is originally from NCBI GenBank NC_004578.1.

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core biosynthetic genes
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Gene details
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General
Compounds
Genes
Biosynthesis
History
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0002571
Short description pyoverdine DC3000 biosynthetic gene cluster from Pseudomonas syringae pv. tomato str. DC3000
Status Quality: questionable
The quality level of this entry.

Status: active
The status of this entry.

Completeness: unknown
Whether the entry covers everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • NRPS (Type I)
Loci
NC_004578.1
4022817 - 4090447
via
Compounds
  • pyoverdine DC3000
Species Pseudomonas syringae pv. tomato str. DC3000 [taxonomy]
References
Chemical products information
pyoverdine DC3000 Evidence:
(no structure information available)
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • PSPTO_RS18425
  • WP_005765159.1
4022920 - 4024272 (+) GntP family permease
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    • PSPTO_RS18430
    • WP_002554157.1
    • csrA
    4024829 - 4025017 (+) carbon storage regulator CsrA
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      • PSPTO_RS18435
      • WP_011104612.1
      4025135 - 4026535 (-) hypothetical protein
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        • PSPTO_RS18440
        • WP_005765163.1
        4027298 - 4027558 (-) DUF1652 domain-containing protein
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          • PSPTO_RS18445
          • WP_005765165.1
          4027965 - 4028447 (-) GNAT family N-acetyltransferase
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            • PSPTO_RS18450
            • WP_005765167.1
            4028816 - 4029760 (+) alpha/beta hydrolase
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              • PSPTO_RS18455
              • WP_005765169.1
              4029815 - 4030279 (+) GNAT family acetyltransferase
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                • PSPTO_RS18460
                • WP_005765172.1
                4030399 - 4032519 (+) TonB-dependent siderophore receptor
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                  • PSPTO_RS18465
                  • WP_005765174.1
                  4032615 - 4033136 (-) DUF3237 domain-containing protein
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                    • PSPTO_RS18470
                    • WP_005765176.1
                    • tvrR
                    4033365 - 4033988 (+) TetR/AcrR family transcriptional regulator TvrR
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                      • PSPTO_RS18475
                      • WP_011104615.1
                      4034169 - 4035797 (+) methyl-accepting chemotaxis protein
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                        • PSPTO_RS18480
                        • WP_032622221.1
                        4035939 - 4036367 (+) nuclear transport factor 2 family protein
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                          • PSPTO_RS18485
                          • WP_010206379.1
                          4036406 - 4037287 (-) CAP domain-containing protein
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                            • PSPTO_RS18490
                            • WP_011104616.1
                            4037428 - 4039068 (-) methyl-accepting chemotaxis protein
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                              • PSPTO_RS18495
                              • WP_046463492.1
                              4039263 - 4039988 (-) GNAT family N-acetyltransferase
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                                • PSPTO_RS18500
                                • WP_046463487.1
                                • katB
                                4040584 - 4042089 (+) catalase KatB
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                                  • PSPTO_RS18505
                                  • WP_011104619.1
                                  4042152 - 4042706 (+) ankyrin repeat domain-containing protein
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                                    • PSPTO_RS18510
                                    • WP_032643380.1
                                    4042719 - 4044812 (-) PAS domain-containing protein
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                                      • PSPTO_RS18515
                                      • WP_005765198.1
                                      4044986 - 4045195 (-) DUF6434 domain-containing protein
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                                        • PSPTO_RS18520
                                        • WP_011104620.1
                                        4045502 - 4046386 (-) LysR family transcriptional regulator
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                                          • PSPTO_RS18525
                                          • WP_149032149.1
                                          4046485 - 4046967 (+) multidrug/biocide efflux PACE transporter
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                                            • PSPTO_RS18530
                                            • WP_011104622.1
                                            4047092 - 4047925 (+) PhzF family phenazine biosynthesis protein
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                                              • PSPTO_RS18535
                                              • WP_005619360.1
                                              4047932 - 4049083 (-) MFS transporter
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                                                • PSPTO_RS18540
                                                • WP_011104623.1
                                                4049295 - 4049951 (+) HAD-IA family hydrolase
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                                                  • PSPTO_RS18545
                                                  • WP_032710497.1
                                                  • rarD
                                                  4050088 - 4050972 (+) EamA family transporter RarD
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                                                    • PSPTO_RS18550
                                                    • WP_005765211.1
                                                    • zapE
                                                    4050976 - 4052091 (-) cell division protein ZapE
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                                                      • PSPTO_RS18555
                                                      • WP_005765213.1
                                                      4052158 - 4053603 (-) SulP family inorganic anion transporter
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                                                        • PSPTO_RS18560
                                                        • WP_005765215.1
                                                        4053747 - 4054898 (+) class C beta-lactamase
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                                                          • PSPTO_RS18565
                                                          • WP_007245293.1
                                                          • ada
                                                          4054891 - 4055997 (-) bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada
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                                                            • PSPTO_RS18570
                                                            • WP_005765220.1
                                                            4056266 - 4057120 (+) iron uptake transporter permease EfeU
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                                                              • PSPTO_RS18575
                                                              • WP_011104624.1
                                                              • efeO
                                                              4057129 - 4058337 (+) iron uptake system protein EfeO
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                                                                • PSPTO_RS18580
                                                                • WP_005765224.1
                                                                • efeB
                                                                4058362 - 4059684 (+) iron uptake transporter deferrochelatase/peroxidase subunit
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                                                                  • PSPTO_RS18585
                                                                  • WP_011104625.1
                                                                  • efeO
                                                                  4059714 - 4060538 (+) iron uptake system protein EfeO
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                                                                    • PSPTO_RS18590
                                                                    • WP_007245290.1
                                                                    4060605 - 4061375 (-) molybdopterin-dependent oxidoreductase
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                                                                      • PSPTO_RS18595
                                                                      • WP_007245289.1
                                                                      4061372 - 4061992 (-) cytochrome b/b6 domain-containing protein
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                                                                        • PSPTO_RS18600
                                                                        • WP_003378210.1
                                                                        4062065 - 4062670 (-) hypothetical protein
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                                                                          • PSPTO_RS18605
                                                                          • WP_002554192.1
                                                                          4062841 - 4063530 (+) heavy metal response regulator transcription factor
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                                                                            • PSPTO_RS18610
                                                                            • WP_011104627.1
                                                                            4063509 - 4064897 (+) heavy metal sensor histidine kinase
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                                                                              • PSPTO_RS18615
                                                                              • WP_003378216.1
                                                                              4064916 - 4065584 (-) polysaccharide lyase family 7 protein
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                                                                                • PSPTO_RS18620
                                                                                • WP_161797779.1
                                                                                4065638 - 4065790 (+) hypothetical protein
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                                                                                  • PSPTO_RS18625
                                                                                  • WP_005741073.1
                                                                                  • istB
                                                                                  4066177 - 4066986 (-) IS21-like element ISPsy4 family helper ATPase IstB
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                                                                                    • PSPTO_RS18630
                                                                                    • WP_002551322.1
                                                                                    • istA
                                                                                    4066983 - 4068005 (-) IS21-like element ISPsy4 family transposase
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                                                                                      • PSPTO_RS18635
                                                                                      • WP_226992642.1
                                                                                      4068079 - 4069107 (+) site-specific integrase
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                                                                                        • PSPTO_RS18640
                                                                                        • WP_011104630.1
                                                                                        4069104 - 4070783 (+) hypothetical protein
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                                                                                          • PSPTO_RS18645
                                                                                          • WP_003409203.1
                                                                                          • tnpB
                                                                                          4071237 - 4071596 (+) IS66 family insertion sequence element accessory protein TnpB
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                                                                                            • PSPTO_RS18650
                                                                                            • WP_003409202.1
                                                                                            4071614 - 4073167 (+) IS66-like element ISPsy5 family transposase
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                                                                                              • PSPTO_RS18655
                                                                                              • WP_226992643.1
                                                                                              4073200 - 4074165 (+) IS5 family transposase
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                                                                                                • PSPTO_RS18660
                                                                                                • WP_162491831.1
                                                                                                4074379 - 4075947 (+) integrase
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                                                                                                  • PSPTO_RS18665
                                                                                                  • WP_080946545.1
                                                                                                  4075954 - 4076361 (+) TetR family transcriptional regulator
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                                                                                                    • PSPTO_RS18670
                                                                                                    • WP_046463358.1
                                                                                                    4076786 - 4077052 (+) hypothetical protein
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                                                                                                      • PSPTO_RS18675
                                                                                                      • WP_011104632.1
                                                                                                      4077186 - 4078172 (-) caspase family protein
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                                                                                                        • PSPTO_RS18680
                                                                                                        • WP_046463357.1
                                                                                                        4078172 - 4078558 (-) TIR domain-containing protein
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                                                                                                          • PSPTO_RS18685
                                                                                                          • WP_046463356.1
                                                                                                          4078727 - 4079317 (-) hypothetical protein
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                                                                                                            • PSPTO_RS18690
                                                                                                            • WP_011104633.1
                                                                                                            4079962 - 4080414 (+) MarR family transcriptional regulator
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                                                                                                              • PSPTO_RS18695
                                                                                                              • WP_046463355.1
                                                                                                              4080411 - 4082498 (+) FUSC family protein
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                                                                                                                • PSPTO_RS18700
                                                                                                                • WP_003378219.1
                                                                                                                4082495 - 4082704 (+) DUF1656 domain-containing protein
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                                                                                                                  • PSPTO_RS18705
                                                                                                                  • WP_011104635.1
                                                                                                                  4082701 - 4083585 (+) HlyD family secretion protein
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                                                                                                                    • PSPTO_RS18710
                                                                                                                    • WP_011104636.1
                                                                                                                    4083582 - 4085015 (+) efflux transporter outer membrane subunit
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                                                                                                                      • PSPTO_RS18735
                                                                                                                      • WP_005619395.1
                                                                                                                      4085993 - 4086826 (+) ion transporter
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                                                                                                                        • PSPTO_RS18740
                                                                                                                        • WP_011104637.1
                                                                                                                        4086925 - 4087923 (+) sulfate ABC transporter substrate-binding protein
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                                                                                                                          • PSPTO_RS18745
                                                                                                                          • WP_011104638.1
                                                                                                                          4087984 - 4088391 (-) lipoprotein
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                                                                                                                            • PSPTO_RS18750
                                                                                                                            • WP_046463733.1
                                                                                                                            • ccmI
                                                                                                                            4088403 - 4089584 (-) c-type cytochrome biogenesis protein CcmI
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                                                                                                                              • PSPTO_RS18755
                                                                                                                              • WP_011104639.1
                                                                                                                              4089581 - 4090051 (-) cytochrome c-type biogenesis protein CcmH
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                                                                                                                                Biosynthesis information

                                                                                                                                No biosynthesis information available for this record.

                                                                                                                                Annotation changelog

                                                                                                                                Entry version: 1

                                                                                                                                Date
                                                                                                                                Changes
                                                                                                                                Submitters
                                                                                                                                Reviewers
                                                                                                                                Entry added
                                                                                                                                • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
                                                                                                                                • (ID: AAAAAAAAAAAAAAAAAAAAAAAA)
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