JYQ62_16305: mal
PKS_AT (112..408): mal
ATSignature: Malonyl-CoA
- Top 3 matches:
- Malonyl-CoA: 91.7%
- inactive: 87.5%
- Methylmalonyl-CoA: 54.2%
minowa: Malonyl-CoA
- Prediction, score:
-
- Malonyl-CoA: 193.0
- inactive: 171.6
- Methoxymalonyl-CoA: 65.4
- Methylmalonyl-CoA: 56.3
- Propionyl-CoA: 45.9
- Isobutyryl-CoA: 38.3
- Acetyl-CoA: 24.5
- 2-Methylbutyryl-CoA: 19.5
- Ethylmalonyl-CoA: 16.5
- CHC-CoA: 15.0
- Benzoyl-CoA: 14.0
- 3-Methylbutyryl-CoA: 11.0
- trans-1,2-CPDA: 10.8
- fatty_acid: 10.4
JYQ62_16310: Ser - Thr - Pro - Ser - X - Leu - Ile - Phe - Pro - Gly
AMP-binding (529..933): Ser
nrpys: Ser
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- ser (Ser)
- Single AA prediction:
- ser (Ser)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVWHISLIDK
- Nearest Stachelhaus code(s):
- Ser DVWHISLIDK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (1618..2036): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWNIGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWNIGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (2703..3109): Pro
nrpys: Pro
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Cyclic aliphatic chain (polar NH2 group) (Pro, Hpr)
- Small clusters prediction:
- pro (Pro)
- Single AA prediction:
- pro (Pro)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAQFIAHVVK
- Nearest Stachelhaus code(s):
- Pro DVQFIAHVVK (85% 8Å match)
- Stachelhaus code match:
- 90% (moderate)
AMP-binding (3771..4175): Ser
nrpys: Ser
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- ser (Ser)
- Single AA prediction:
- ser (Ser)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVWHISLIDK
- Nearest Stachelhaus code(s):
- Ser DVWHISLIDK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (4845..5241): X
nrpys: Tyr, Pro
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aromatic (Phe, Tyr, diOH-Bz, Ph-Gly, bOH-Tyr)
- Large clusters prediction:
- Aromatic side chain (Phe, Trp, Ph-Gly, Tyr, bOH-Tyr)
- Small clusters prediction:
- Polar aromatic ring (Tyr, bOH-Tyr)
- Single AA prediction:
- tyr (Tyr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DASTIAAVCK
- Nearest Stachelhaus code(s):
- Tyr or Pro DASTIAAVCK (97% 8Å match)
- Tyr DASTIAAVCK (85% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (6375..6775): Leu
nrpys: Leu
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- leu (Leu)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAWFLGNVVK
- Nearest Stachelhaus code(s):
- Leu DAWFLGNVVK (94% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (7916..8320): Ile
nrpys: Ile
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- ile (Ile)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAFFLGVTFK
- Nearest Stachelhaus code(s):
- Ile DAFFLGVTFK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (8990..9386): Phe
nrpys: Phe
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aromatic (Phe, Tyr, diOH-Bz, Ph-Gly, bOH-Tyr)
- Large clusters prediction:
- Aromatic side chain (Phe, Trp, Ph-Gly, Tyr, bOH-Tyr)
- Small clusters prediction:
- Unpolar aromatic ring (Phe, Trp)
- Single AA prediction:
- phe (Phe)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAWTIAAVCK
- Nearest Stachelhaus code(s):
- Phe DAWTIAAVCK (94% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (10520..10926): Pro
nrpys: Pro
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Cyclic aliphatic chain (polar NH2 group) (Pro, Hpr)
- Small clusters prediction:
- pro (Pro)
- Single AA prediction:
- pro (Pro)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAHFIAHVVK
- Nearest Stachelhaus code(s):
- Pro DVQFIAHVVK (85% 8Å match)
- Stachelhaus code match:
- 80% (moderate)
AMP-binding (11588..12003): Gly
nrpys: Gly
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Tiny, hydrophilic, transition to aliphatic (Gly, Ala)
- Single AA prediction:
- gly (Gly)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DILQLGLIWK
- Nearest Stachelhaus code(s):
- Gly DILQLGLIWK (97% 8Å match)
- Stachelhaus code match:
- 100% (strong)
JYQ62_16330: Val - Pro - X - Thr
AMP-binding (477..881): Val
nrpys: Val
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- val (Val)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAFWLGGTFK
- Nearest Stachelhaus code(s):
- Val DAFWLGGTFK (88% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (1543..1953): Pro
nrpys: Pro
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Cyclic aliphatic chain (polar NH2 group) (Pro, Hpr)
- Small clusters prediction:
- pro (Pro)
- Single AA prediction:
- pro (Pro)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DVQFIAHAAK
- Nearest Stachelhaus code(s):
- Pro DVQFIAHAVK (94% 8Å match)
- 4Me-Pro DVQFIAHVAK (88% 8Å match)
- Stachelhaus code match:
- 90% (moderate)
AMP-binding (2615..3011): X
nrpys: Tyr, Pro
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aromatic (Phe, Tyr, diOH-Bz, Ph-Gly, bOH-Tyr)
- Large clusters prediction:
- Aromatic side chain (Phe, Trp, Ph-Gly, Tyr, bOH-Tyr)
- Small clusters prediction:
- Polar aromatic ring (Tyr, bOH-Tyr)
- Single AA prediction:
- tyr (Tyr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DASTIAAVCK
- Nearest Stachelhaus code(s):
- Tyr or Pro DASTIAAVCK (97% 8Å match)
- Tyr DASTIAAVCK (85% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (4145..4553): Thr
nrpys: Thr
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Aliphatic chain or phenyl group with -OH (Ser, Thr, Dhpg, Hpg)
- Small clusters prediction:
- thr (Thr)
- Single AA prediction:
- thr (Thr)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DFWNIGMVHK
- Nearest Stachelhaus code(s):
- Thr DFWNIGMVHK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
JYQ62_16335: X
AMP-binding (547..951): X
nrpys: (unknown)
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
- Large clusters prediction:
- Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
- Small clusters prediction:
- N/A
- Single AA prediction:
- N/A
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLKNFGSDVK
- Nearest Stachelhaus code(s):
- Hse DLKNVGSDVK (76% 8Å match)
- Stachelhaus code match:
- 90% (moderate)
JYQ62_16355: Ile - Leu - X - Leu - Gln - Ile
AMP-binding (530..934): Ile
nrpys: Ile
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- ile (Ile)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAFFLGVTFK
- Nearest Stachelhaus code(s):
- Ile DAFFLGVTFK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (1595..1995): Leu
nrpys: Leu
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- leu (Leu)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAWFLGNVVK
- Nearest Stachelhaus code(s):
- Leu DAWFLGNVVK (94% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (3137..3541): X
nrpys: (unknown)
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
- Large clusters prediction:
- Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
- Small clusters prediction:
- N/A
- Single AA prediction:
- N/A
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DLKNFGSDVK
- Nearest Stachelhaus code(s):
- Hse DLKNVGSDVK (76% 8Å match)
- Stachelhaus code match:
- 90% (moderate)
AMP-binding (4201..4601): Leu
nrpys: Leu
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- leu (Leu)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAWFLGNVVK
- Nearest Stachelhaus code(s):
- Leu DAWFLGNVVK (94% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (5735..6132): Gln
nrpys: Gln
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophilic (Arg, Asp, Glu, Asn, Lys, Gln, Orn, Aad)
- Large clusters prediction:
- Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
- Small clusters prediction:
- glu,gln (Glu, Gln)
- Single AA prediction:
- gln (Gln)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAWQFGLIDK
- Nearest Stachelhaus code(s):
- Gln DAWQFGLIDK (94% 8Å match)
- Stachelhaus code match:
- 100% (strong)
AMP-binding (6798..7202): Ile
nrpys: Ile
- SVM prediction details:
-
- Predicted physicochemical class:
- hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
- Large clusters prediction:
- Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
- Small clusters prediction:
- Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
- Single AA prediction:
- ile (Ile)
- Stachelhaus prediction details:
-
- Stachelhaus sequence:
- DAFFLGVTFK
- Nearest Stachelhaus code(s):
- Ile DAFFLGVTFK (100% 8Å match)
- Stachelhaus code match:
- 100% (strong)
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