BGC0002648 - 1 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

BGC0002648 (Shewanella sp. N2AIL)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	hglE-KS,PUFA	1	20,487	eicosapentaenoic acid	PKS	100%

BGC0002648 - Region 1 - PUFA,hglE-KS

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Location: 1 - 20,487 nt. (total: 20,487 nt) Show pHMM detection rules used

Region on contig edge.

hglE-KS: (hglE or hglD)
PUFA: PUFA_KS

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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Gene details

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Gene overview

MIBiG

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

External annotation

Name		MIBiG
Version		4.0alpha

Type		Subregion
Location		1 - 20,488
Label		BGC0002648

Detailed domain annotation

Selected features only

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Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002648	1.88	Polyketide	eicosapentaenoic acid	Shewanella sp. N2AIL
BGC0000861	1.44	Other	eicosapentaenoic acid	Shewanella sp. BR-2
BGC0000862	0.91	Other	eicosapentaenoic acid	Shewanella pneumatophori
BGC0000865	0.56	Other	eicoseicosapentaenoic acid	Photobacterium profundum SS9
BGC0000284	0.49	Polyketide	phenolic lipids	Azotobacter vinelandii DJ
BGC0000864	0.47	Other	eicosapentaenoic acid-like compound	Moritella marina ATCC 15381
BGC0000863	0.47	Other	eicosapentaenoic acid	Pseudoalteromonas sp. DS-12
BGC0000869	0.46	Other	heterocyst glycolipids	Nostoc sp. 'Peltigera membranacea cyanobiont'
BGC0001872	0.40	Polyketide	fabclavine-polyamine	Xenorhabdus bovienii SS-2004
BGC0000044	0.30	Polyketide	dawenol	Stigmatella aurantiaca DW4/3-1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002648	0.98	Polyketide	eicosapentaenoic acid	Shewanella sp. N2AIL
BGC0000861	0.90	Other	eicosapentaenoic acid	Shewanella sp. BR-2
BGC0000862	0.76	Other	eicosapentaenoic acid	Shewanella pneumatophori
BGC0000865	0.62	Other	eicoseicosapentaenoic acid	Photobacterium profundum SS9
BGC0000284	0.58	Polyketide	phenolic lipids	Azotobacter vinelandii DJ
BGC0000864	0.57	Other	eicosapentaenoic acid-like compound	Moritella marina ATCC 15381
BGC0000863	0.57	Other	eicosapentaenoic acid	Pseudoalteromonas sp. DS-12
BGC0000869	0.56	Other	heterocyst glycolipids	Nostoc sp. 'Peltigera membranacea cyanobiont'
BGC0001872	0.52	Polyketide	fabclavine-polyamine	Xenorhabdus bovienii SS-2004
BGC0000044	0.45	Polyketide	dawenol	Stigmatella aurantiaca DW4/3-1

Similar known gene clusters from MIBiG 4.0

Module view

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NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 20487:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

MO387_01215

PKS_AT (394..711): pk

ATSignature: (unknown)

No matches above 50%

minowa: trans-1,2-CPDA

Prediction, score:

trans-1,2-CPDA: 0.0
inactive: 0.0
fatty_acid: 0.0
Propionyl-CoA: 0.0
Methylmalonyl-CoA: 0.0
Methoxymalonyl-CoA: 0.0
Malonyl-CoA: 0.0
Isobutyryl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

MO387_01220

PKS_AT (607..918): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 79.2%; inactive: 70.8%; 2-Rhyd-Malonyl-CoA: 62.5%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 92.9
Methoxymalonyl-CoA: 28.2
inactive: 27.9
Methylmalonyl-CoA: 18.8
fatty_acid: 18.3
Isobutyryl-CoA: 11.7
CHC-CoA: 9.2
Propionyl-CoA: 3.6
trans-1,2-CPDA: 0.0
Ethylmalonyl-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0