BGC0002693: pyoverdine SXM-1 biosynthetic gene cluster from Pseudomonas sp. SXM-1
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Location: 4,888,251 - 4,981,624 nt. (total: 93,374 nt).
This entry is originally from NCBI GenBank CP038001.1, but has been modified (see Modifications tab for details).

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General information about the BGC

MIBiG accession | BGC0002693
Short description | pyoverdine SXM-1 biosynthetic gene cluster from Pseudomonas sp. SXM-1
Status | Quality: questionable The quality level of this entry. Status: active The status of this entry. Completeness: unknown Whether the entry covers everything needed for the pathway producing the compound(s)

Biosynthetic class(es)

- NRPS (Type I)

Loci
CP038001.1
4908251 - 4974913
via
Compounds

- pyoverdine SXM-1

Species Pseudomonas sp. SXM-1 [taxonomy]
References

- [1] Complete genome sequence of a marine-derived bacterium Pseudomonas sp. SXM-1 and characterization of its siderophore through antiSMASH analysis and with mass spectroscopic method. Guo W et al., Mar Genomics (2021) PMID:33517979

Chemical products information
pyoverdine SXM-1 Evidence:
Copy SMILES
C52H75N15O23
List of genes involved in compound(s) production

Identifiers | Position | Product | Functions | Evidence | Extra
--- | --- | --- | --- | --- | ---
DCC84_23115 QBQ12451.1 | 4908251 - 4909588 (-) | ornithine monooxygenase |  |  | copy AA seq copy Nt seq
DCC84_23120 QBQ12452.1 | 4909716 - 4910198 (-) | sigma-70 family RNA polymerase sigma factor |  |  | copy AA seq copy Nt seq
DCC84_23125 QBQ12453.1 | 4910455 - 4911627 (+) | efflux RND transporter periplasmic adaptor subunit |  |  | copy AA seq copy Nt seq
DCC84_23130 QBQ12454.1 macB | 4911628 - 4913598 (+) | MacB family efflux pump subunit |  |  | copy AA seq copy Nt seq
DCC84_23135 QBQ12455.1 | 4913606 - 4915015 (+) | efflux transporter outer membrane subunit |  |  | copy AA seq copy Nt seq
DCC84_23140 QBQ12456.1 | 4915060 - 4916688 (-) | PvdJ/PvdD/PvdP-like protein |  |  | copy AA seq copy Nt seq
DCC84_23145 QBQ12457.1 | 4916841 - 4918190 (+) | membrane dipeptidase |  |  | copy AA seq copy Nt seq
DCC84_23150 QBQ12458.1 | 4918218 - 4919495 (+) | aminotransferase class V-fold PLP-dependent enzyme |  |  | copy AA seq copy Nt seq
DCC84_23155 QBQ12459.1 | 4919527 - 4920402 (+) | formylglycine-generating enzyme family protein |  |  | copy AA seq copy Nt seq
DCC84_23160 QBQ12460.1 | 4920554 - 4922203 (+) | cyclic peptide export ABC transporter |  |  | copy AA seq copy Nt seq
DCC84_23165 QBQ12461.1 | 4922301 - 4924766 (+) | TonB-dependent siderophore receptor |  |  | copy AA seq copy Nt seq
DCC84_23170 QBQ12462.1 | 4924817 - 4925779 (-) | alpha/beta hydrolase |  |  | copy AA seq copy Nt seq
DCC84_23175 QBQ12463.1 | 4925864 - 4938193 (-) | amino acid adenylation domain-containing protein |  |  | copy AA seq copy Nt seq
DCC84_23180 QBQ12464.1 | 4938193 - 4949253 (-) | amino acid adenylation domain-containing protein |  |  | copy AA seq copy Nt seq
DCC84_23185 QBQ12465.1 | 4949256 - 4961624 (-) | amino acid adenylation domain-containing protein |  |  | copy AA seq copy Nt seq
DCC84_23190 QBQ12466.1 | 4961834 - 4962085 (+) | type II toxin-antitoxin system HicA family toxin |  |  | copy AA seq copy Nt seq
DCC84_23195 QBQ12467.1 | 4962082 - 4962438 (+) | type II toxin-antitoxin system HicB family antitoxin |  |  | copy AA seq copy Nt seq
DCC84_23200 QBQ12468.1 | 4962439 - 4963611 (-) | MFS transporter |  |  | copy AA seq copy Nt seq
DCC84_23205 QBQ12469.1 | 4963746 - 4964330 (+) | TetR/AcrR family transcriptional regulator |  |  | copy AA seq copy Nt seq
DCC84_23210 | 4964513 - 4964608 (+) | helix-turn-helix domain-containing protein |  |  | copy AA seq copy Nt seq
DCC84_23215 | 4964919 - 4965026 (-) | helix-turn-helix domain-containing protein |  |  | copy AA seq copy Nt seq
DCC84_23220 QBQ12470.1 | 4965238 - 4966746 (-) | DHA2 family efflux MFS transporter permease subunit |  |  | copy AA seq copy Nt seq
DCC84_23225 QBQ12471.1 | 4966736 - 4967866 (-) | HlyD family secretion protein |  |  | copy AA seq copy Nt seq
DCC84_23230 QBQ12472.1 | 4967863 - 4969311 (-) | TolC family protein |  |  | copy AA seq copy Nt seq
DCC84_23235 QBQ12473.1 | 4969426 - 4970169 (-) | AraC family transcriptional regulator |  |  | copy AA seq copy Nt seq
DCC84_23240 QBQ12474.1 | 4970331 - 4971131 (+) | SDR family oxidoreductase |  |  | copy AA seq copy Nt seq
DCC84_23245 QBQ12475.1 | 4971124 - 4972950 (+) | glycoside hydrolase family 15 protein |  |  | copy AA seq copy Nt seq
DCC84_23250 QBQ12476.1 | 4973087 - 4973548 (+) | cysteine hydrolase family protein |  |  | copy AA seq copy Nt seq
DCC84_23255 | 4973733 - 4973801 (+) | NAD-dependent DNA ligase |  |  | copy AA seq copy Nt seq
DCC84_23260 | 4973806 - 4973955 (+) | glyoxalase/bleomycin resistance/dioxygenase family protein |  |  | copy AA seq copy Nt seq
DCC84_23265 QBQ12477.1 | 4974005 - 4974913 (+) | alpha/beta hydrolase |  |  | copy AA seq copy Nt seq
DCC84_23270 QBQ12478.1 | 4974891 - 4977086 (-) | GAF domain-containing protein |  |  | copy AA seq copy Nt seq

Biosynthesis information

No biosynthesis information available for this record.

Annotation changelog

#### Entry version: 2

Date
Changes
Submitters
Reviewers
2024-03-19
MIBiG v4 annotathon

- (ID: 37IOAS4X5OHP34DPN55OLFBF)
- (ID: PK3KAPGHQJXJCKMJ4SU7V5JW)

- (ID: AAAAAAAAAAAAAAAAAAAAAAAA)

#### Entry version: 1

Date
Changes
Submitters
Reviewers
2022-09-15
Entry added

- (ID: AAAAAAAAAAAAAAAAAAAAAAAA)

- (ID: AAAAAAAAAAAAAAAAAAAAAAAA)

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Modifications to original record

- DCC84_00005 crossed the origin and was split into two features