BGC0002716 - 1 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

BGC0002716 (Photorhabdus laumondii subsp. laumondii)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	NRPS	1	53,197	gamexpeptide A/gamexpeptide B/gamexpeptide E/luminmide B/luminmide D/luminmide E/luminmide F/luminmide G	NRPS:Type I	100%

BGC0002716 - Region 1 - NRPS

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Location: 1 - 53,197 nt. (total: 53,197 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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Gene details

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Gene overview

MIBiG

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

External annotation

Name		MIBiG
Version		4.0alpha

Type		Subregion
Location		1 - 53,198
Label		BGC0002716

Detailed domain annotation

Selected features only

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Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002716	1.00	NRP	gamexpeptide A, gamexpeptide B, gamexpeptide E, luminmide B, luminmide D, luminmide E, luminmide F, luminmide G	Photorhabdus laumondii subsp. laumondii
BGC0001128	1.00	NRP	gamexpeptide C	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001132	0.43	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0002286	0.42	NRP	ririwpeptide A, ririwpeptide B, ririwpeptide C	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001135	0.40	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0002135	0.38	NRP	bovienimide A	Xenorhabdus bovienii SS-2004
BGC0002518	0.36	NRP	syringafactin A, syringafactin C	Pseudomonas sp. SZ57
BGC0001833	0.36	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001758	0.34	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001844	0.33	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002716	1.00	NRP	gamexpeptide A, gamexpeptide B, gamexpeptide E, luminmide B, luminmide D, luminmide E, luminmide F, luminmide G	Photorhabdus laumondii subsp. laumondii
BGC0001128	1.00	NRP	gamexpeptide C	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001132	0.74	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0002286	0.73	NRP	ririwpeptide A, ririwpeptide B, ririwpeptide C	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001135	0.72	NRP	bicornutin A1, bicornutin A2	Xenorhabdus budapestensis
BGC0002135	0.70	NRP	bovienimide A	Xenorhabdus bovienii SS-2004
BGC0002518	0.69	NRP	syringafactin A, syringafactin C	Pseudomonas sp. SZ57
BGC0001833	0.68	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001758	0.67	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001844	0.66	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454

Similar known gene clusters from MIBiG 4.0

Module view

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NRPS/PKS products

NRPS/PKS substrates

Predicted core structure(s)

For candidate cluster 1, location 0 - 53197:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - Leu - X - Leu - Leu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS substrate predictions

PluTT01m_16815

Search NORINE for peptide: strict or relaxed

AMP-binding (64..463): X

nrpys: Ile, Val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: Aliphatic, branched hydrophobic (Val, Leu, Ile, Abu, Ival)
Single AA prediction:: val (Val)