LOCUS       BGC0002725              1195 bp    DNA     linear   CON 03-MAY-2023
DEFINITION  Streptomyces prunicolor NBRC 13075, whole genome shotgun sequence.
ACCESSION   BGC0002725
VERSION     BGC0002725
KEYWORDS    WGS; STANDARD_DRAFT; RefSeq.
SOURCE      Streptomyces prunicolor NBRC 13075
  ORGANISM  Streptomyces prunicolor NBRC 13075
            Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales;
            Streptomycetaceae; Streptomyces.
REFERENCE   1
  AUTHORS   Hosoyama,A., Ando,Y., Noguchi,M., Numata,M., Hashimoto,M.,
            Yamamura,H., Yamazoe,A., Ohji,S., Yamazaki,S. and Fujita,N.
  TITLE     Whole genome shotgun sequence of Streptomyces prunicolor NBRC 13075
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 451240)
  AUTHORS   Hosoyama,A., Ohji,S., Ichikawa,N., Yamazoe,A., Yamazaki,S. and
            Fujita,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2013) Contact:Director-General Biological Resource
            Center National Institute of Technology and Evaluation, NITE
            Biological Resource Center; 2-49-10 Nishihara, Shibuya-ku, Tokyo
            151-0066, Japan URL :http://www.bio.nite.go.jp/
COMMENT     ##Genome-Assembly-Data-START##
            Finishing Goal                    :: Noncontiguous Finished
            Current Finishing Status          :: Standard Draft
            Assembly Method                   :: Newbler v. 2.6
            Genome Coverage                   :: 77x
            Sequencing Technology :: 454 GS-FLX Titanium;Illumina HiSeq 1000
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 05/03/2023 02:36:25
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 10,912
            CDSs (total)                      :: 10,828
            Genes (coding)                    :: 10,553
            CDSs (with protein)               :: 10,553
            Genes (RNA)                       :: 84
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 76
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 275
            CDSs (without protein)            :: 275
            Pseudo Genes (ambiguous residues) :: 0 of 275
            Pseudo Genes (frameshifted)       :: 90 of 275
            Pseudo Genes (incomplete)         :: 214 of 275
            Pseudo Genes (internal stop)      :: 16 of 275
            Pseudo Genes (multiple problems)  :: 41 of 275
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            ##antiSMASH-Data-START##
            Version                           :: 8.dev-5707d64f
            Run date                          :: 2025-08-15 22:28:32
            ##antiSMASH-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            BARF01000025.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     region          1..1195
                     /contig_edge="True"
                     /product="unknown"
                     /region_number="1"
                     /subregion_numbers="1"
                     /tool="antismash"
     subregion       1..1195
                     /aStool="externally annotated by: MIBiG"
                     /contig_edge="True"
                     /label="BGC0002725"
                     /subregion_number="1"
                     /tool="antismash"
     gene            1..192
                     /gene="tgmA"
                     /locus_tag="SPR02S_RS10540"
     CDS             1..192
                     /codon_start=1
                     /gene="tgmA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007386718.1"
                     /locus_tag="SPR02S_RS10540"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /product="putative ATP-grasp-modified RiPP"
                     /protein_id="WP_019056920.1"
                     /transl_table=11
                     /translation="MQPFALNYARPAAQLELSAPYTYDSGLQLNVLADGRVAAHDLALL
                     RELGTTTSTAGSKTHFDD"
     gene            209..1195
                     /gene="tgmB"
                     /locus_tag="SPR02S_RS10545"
     CDS             209..1195
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA];
                     GO:0046872 - metal ion binding [Evidence IEA]"
                     /codon_start=1
                     /gene="tgmB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019070091.1"
                     /locus_tag="SPR02S_RS10545"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /product="ATP-grasp ribosomal peptide maturase"
                     /protein_id="WP_019056921.1"
                     /transl_table=11
                     /translation="MTVLVLTCEEDVTADLVVVHLHASGVPVVRIDPADLTGGVALSGE
                     YVHGAFRGHLSAGGRLVSVSGLRSIWVRRPGTPATRAPQPSAWLTEEASQALYGMLRGS
                     GARWMNHPDAARRARHKPWQLRLAQRSGLPVPATLITTFPQAAREFSRRFPDLVVKPVS
                     GAHPQDPPRAVPTSRVAPDTDFAAVAFGPTLLQRRVAKRADIRLTVVGDRMLAARTATA
                     PDPDPAEVDVRFAVSAQPWRPTEVPPRIAEAVLTYMRDAELAYGAFDFAEDGDGTWWFL
                     ECNQSGQFGFVEAETGQPIARTIAEWLALPAAPEREGLVNGADSTAG"
ORIGIN
        1 atgcaaccgt tcgcgctcaa ctacgctcgc ccggcagcac agttggagct cagcgctccg
       61 tacacctacg actccggact gcagttgaac gtgctcgccg acggacgggt cgccgcccat
      121 gatctcgctc tgctgagaga actggggacc acgacgtcca ccgcgggatc gaagactcac
      181 ttcgacgact gaacacggaa cgacgaaaat gaccgtcctg gtccttacct gcgaagagga
      241 cgtcacggcg gacctggtgg tggtccacct gcacgcgtcc ggcgtccccg tggtccggat
      301 cgatcccgcc gacctcacgg gcggggtagc gctgtccggc gagtacgtcc atggtgcctt
      361 ccgcggtcat ctgtccgccg gggggcggct ggtgagcgtg agcggactgc ggtccatctg
      421 ggtgcgcagg cccggcaccc cggcgacccg tgcgccccag ccctccgcgt ggctgaccga
      481 ggaggcctcc caggcgctct acggcatgct gcgcggctcc ggtgcccgct ggatgaacca
      541 ccccgacgcg gcccgccgcg cccggcacaa gccctggcag ctgcggctcg cgcagcgcag
      601 cggactgccg gtgccggcca ccctgatcac cacgtttccg caggccgccc gcgagttctc
      661 gcggcgcttc ccggacctgg tggtcaagcc ggtctccggc gcccacccgc aggatccgcc
      721 ccgggcggtg ccgacgagcc gggtcgcgcc ggacaccgac ttcgccgccg tcgcgttcgg
      781 tcccacgctg ctgcaacgcc gggtcgccaa gcgcgccgac atccggctca ccgtggtggg
      841 cgaccggatg ctcgccgccc gtacggcgac cgccccggac cccgaccccg ccgaggtcga
      901 cgtccgcttc gccgtgtccg cgcagccctg gcgccccacc gaggtcccgc cgcgcatcgc
      961 cgaggccgtc ctgacgtaca tgcgggacgc cgaactggcc tacggcgcct tcgacttcgc
     1021 cgaggacggc gacgggacct ggtggttcct ggagtgcaac cagtcgggcc agttcggctt
     1081 cgtcgaggcg gagaccggcc agccgatcgc ccggaccatc gcggagtggc tggccctgcc
     1141 cgccgccccg gaacgggagg gcctcgtcaa cggggcggac agtacggccg gttga
//
