BGC0000984: delftibactin A biosynthetic gene cluster from Delftia acidovorans SPH-1
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Location: 5,200,652 - 5,260,767 nt. (total: 60,116 nt).
This entry is originally from NCBI GenBank CP000884.1.

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core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
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Gene details
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General
Compounds
Genes
NRP
History
NRPS/PKS domains
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0000984
Short description delftibactin A biosynthetic gene cluster from Delftia acidovorans SPH-1
Status Minimal annotation: no
A minimal annotation only contains information on the BGC loci and one or more linked chemical product(s)

Completeness: Unknown
Whether the loci encodes everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • NRP
  • Polyketide
Loci NCBI GenBank: CP000884.1
Compounds
  • delftibactin A
  • delftibactin B
Species Delftia acidovorans SPH-1 [taxonomy]
References
Chemical products information
delftibactin A
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C40H68N14O18
Chemical database entries
PubCHEM
NPAtlas
delftibactin B
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C41H70N14O18
Chemical database entries
PubCHEM
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • Daci_4745
  • ABX37374.1
 5200653 - 5201507 (-) conserved hypothetical protein
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  • Daci_4746
  • ABX37375.1
 5201529 - 5203244 (-) cyclic peptide transporter
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  • Daci_4747
  • ABX37376.1
 5203490 - 5204455 (+) Alpha/beta hydrolase fold-3 domain protein
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  • Daci_4748
  • ABX37377.1
 5204515 - 5205717 (+) conserved hypothetical protein
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  • Daci_4749
  • ABX37378.1
 5205729 - 5207027 (+) L-lysine 6-monooxygenase (NADPH)
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  • Daci_4750
  • ABX37379.1
 5207240 - 5207839 (+) RNA polymerase, sigma-24 subunit, ECF subfamily
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  • Daci_4751
  • ABX37380.1
 5207852 - 5208886 (+) anti-FecI sigma factor, FecR
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  • Daci_4752
  • ABX37381.1
 5208963 - 5211362 (-) TonB-dependent siderophore receptor
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  • Daci_4753
  • ABX37382.1
 5211544 - 5230074 (-) amino acid adenylation domain protein
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  • Daci_4754
  • ABX37383.1
 5230074 - 5240069 (-) amino acid adenylation domain protein
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  • Daci_4755
  • ABX37384.1
 5240032 - 5244714 (-) Beta-ketoacyl synthase
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  • Daci_4756
  • ABX37385.1
 5244714 - 5250083 (-) amino acid adenylation domain protein
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  • Daci_4757
  • ABX37386.1
 5250104 - 5251093 (-) Taurine catabolism dioxygenase TauD/TfdA
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  • Daci_4758
  • ABX37387.1
 5251090 - 5251779 (-) 4'-phosphopantetheinyl transferase
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  • Daci_4759
  • ABX37388.1
 5251757 - 5252500 (-) Thioesterase
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  • Daci_4760
  • ABX37389.1
 5252506 - 5252871 (-) MbtH domain protein
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  • Daci_4761
  • ABX37390.1
 5252942 - 5253466 (-) RNA polymerase, sigma-24 subunit, ECF subfamily
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  • Daci_4762
  • ABX37391.1
 5254614 - 5254949 (-) nitrogen regulatory protein P-II
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  • Daci_4763
  • ABX37392.1
 5254966 - 5258055 (-) heavy metal efflux pump, CzcA family
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  • Daci_4764
  • ABX37393.1
 5258060 - 5259277 (-) efflux transporter, RND family, MFP subunit
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NRP-specific information
Subclass N/A
Cyclic? no
NRP-synthases
Gene Modules
Daci_4753
Module ?
Specificity: threonine
Evidence for specificity:
  • Structure-based inference
  • Sequence-based prediction
Module ?
Specificity: ornithine
Evidence for specificity:
  • Structure-based inference
  • Sequence-based prediction
Module ?
Specificity: serine
Evidence for specificity:
  • Structure-based inference
  • Sequence-based prediction
Module ?
Specificity: arginine
Evidence for specificity:
  • Structure-based inference
  • Sequence-based prediction
Module ?
Specificity: N5-hydroxyornithine
Evidence for specificity:
  • Structure-based inference
  • Sequence-based prediction
Daci_4754
Module ?
Specificity: aspartic acid
Evidence for specificity:
  • Structure-based inference
  • Sequence-based prediction
Module ?
Specificity: threonine
Evidence for specificity:
  • Structure-based inference
  • Sequence-based prediction
Module ?
Specificity: glycine
Evidence for specificity:
  • Structure-based inference
  • Sequence-based prediction
Daci_4756
Module ?
Specificity: serine
Evidence for specificity:
  • Structure-based inference
  • Sequence-based prediction
Annotation changelog
MIBiG version Submitter Notes
1.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Submitted
2.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Migrated from v1.4
3.0
  • Hidden contributor (ID: 5UL74VURKJ25VSPPPO3H2NYB, no GDPR consent given).
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Linked new NPAtlas id for delftibactin A (npatlas:NPA020191)
  • Refined reference coordinates
  • Added NRP substrate specificities
Detailed domain annotation
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