BGC0001100: lankacidin C biosynthetic gene cluster from Streptomyces rochei
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
Location: 4,922 - 35,881 nt. (total: 30,960 nt).
This entry is originally from NCBI GenBank AB088224.2.

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
other genes
reset zoomreset view
zoomzoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
General
Compounds
Genes
History
KnownClusterBlast
NRPS/PKS domains
General information about the BGC
MIBiG accession BGC0001100
Short description lankacidin C biosynthetic gene cluster from Streptomyces rochei
Status Minimal annotation: yes
A minimal annotation only contains information on the BGC loci and one or more linked chemical product(s)

Completeness: Unknown
Whether the loci encodes everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • NRP
  • Polyketide
Loci NCBI GenBank: AB088224.2
Compounds
  • lankacidin C
Species Streptomyces rochei [taxonomy]
References
Chemical products information
lankacidin C
Copy SMILES
C25H33N1O7
Chemical database entries
NPAtlas
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • BAC76462.1
  • lkcO
4922 - 5812 (-) pyrroloquinoline quinone biosynthesis protein B
copy AA seq
copy Nt seq
  • BAC76463.1
  • lkcN
5815 - 6909 (-) pyrroloquinoline quinone biosynthesis protein E
copy AA seq
copy Nt seq
  • BAC76464.1
  • lkcM
6902 - 7174 (-) pyrroloquinoline quinone biosynthesis protein D
copy AA seq
copy Nt seq
  • BAC76465.1
  • lkcL
7171 - 7899 (-) pyrroloquinoline quinone biosynthesis protein C
copy AA seq
copy Nt seq
  • BAC76466.1
  • lkcK
7926 - 8030 (-) pyrroloquinoline quinone biosynthesis protein A
copy AA seq
copy Nt seq
  • BAC76467.1
  • lkcJ
8420 - 10057 (+) putative ABC transporter protein
copy AA seq
copy Nt seq
  • BAC76468.1
  • lkcI
10050 - 11759 (+) putative ABC transporter protein
copy AA seq
copy Nt seq
  • BAC76469.1
  • lkcH
11815 - 12369 (-) probable isochorismatase
copy AA seq
copy Nt seq
  • BAC76470.1
  • lkcG
12434 - 15214 (-) type I polyketide synthase LkcG
copy AA seq
copy Nt seq
  • BAC76471.1
  • lkcF
15266 - 22306 (-) type I polyketide synthase LkcF
copy AA seq
copy Nt seq
  • BAC76472.1
  • lkcE
22359 - 23675 (-) amine oxidase LkcE
copy AA seq
copy Nt seq
  • BAC76473.1
  • lkcD
23675 - 24556 (-) acyltransferase LkcD
copy AA seq
copy Nt seq
  • BAC76474.1
  • lkcC
24568 - 30156 (-) type I polyketide synthase LkcC
copy AA seq
copy Nt seq
  • BAC76475.1
  • lkcB
30186 - 31016 (-) dehydratase LkcB
copy AA seq
copy Nt seq
  • BAC76476.1
  • lkcA
31013 - 35881 (-) multifunctional polyketide-peptide synthase LkcA
copy AA seq
copy Nt seq
Annotation changelog
MIBiG version Submitter Notes
1.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Submitted
2.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Migrated from v1.4
  • Updated compound(s) information (NPAtlas curation)
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains