BGC0001343 - 1 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

BGC0001343 (Stigmatella aurantiaca Sg a15)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	HR-T2PKS	1	19,349	aurachin A/aurachin D	PKS	100%

BGC0001343 - Region 1 - HR-T2PKS

Download region GenBank file

Download region SVG

Location: 1 - 19,349 nt. (total: 19,349 nt) Show pHMM detection rules used

Region on contig edge.

HR-T2PKS: (hr-t2pks-ksa and (t2fas or APE_KS2 or ketoacyl-synt))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

MIBiG

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

External annotation

Name		MIBiG
Version		4.0alpha

Type		Subregion
Location		1 - 19,350
Label		BGC0001343

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001343	0.88	Polyketide	aurachin A, aurachin D	Stigmatella aurantiaca Sg a15
BGC0000272	0.22	Polyketide	spore pigment	Streptomyces collinus
BGC0001895	0.22	Polyketide	huanglongmycin A, huanglongmycin B, huanglongmycin C	Streptomyces sp. CB09001
BGC0001366	0.21	Polyketide	BE-24566B, zunyimycin A	Streptomyces sp. FJS31-2
BGC0000231	0.21	Polyketide	griseusin A, griseusin B	Streptomyces griseus
BGC0002510	0.20	Polyketide	youssoufene A1, youssoufene B1, youssoufene B2, youssoufene B3, youssoufene B4	Streptomyces sp.
BGC0001197	0.20	Polyketide	frankiamicin	Frankia sp. EAN1pec
BGC0000234	0.20	Polyketide	jadomycin	Streptomyces venezuelae ATCC 10712
BGC0000275	0.19	Polyketide	tetracenomycin C	Streptomyces glaucescens
BGC0000922	0.19	Other	pseudomonas quinolone signal (PQS)	Pseudomonas aeruginosa PAO1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001343	0.96	Polyketide	aurachin A, aurachin D	Stigmatella aurantiaca Sg a15
BGC0000272	0.55	Polyketide	spore pigment	Streptomyces collinus
BGC0001895	0.55	Polyketide	huanglongmycin A, huanglongmycin B, huanglongmycin C	Streptomyces sp. CB09001
BGC0001366	0.54	Polyketide	BE-24566B, zunyimycin A	Streptomyces sp. FJS31-2
BGC0000231	0.53	Polyketide	griseusin A, griseusin B	Streptomyces griseus
BGC0002510	0.53	Polyketide	youssoufene A1, youssoufene B1, youssoufene B2, youssoufene B3, youssoufene B4	Streptomyces sp.
BGC0001197	0.53	Polyketide	frankiamicin	Frankia sp. EAN1pec
BGC0000234	0.52	Polyketide	jadomycin	Streptomyces venezuelae ATCC 10712
BGC0000275	0.51	Polyketide	tetracenomycin C	Streptomyces glaucescens
BGC0000922	0.51	Other	pseudomonas quinolone signal (PQS)	Pseudomonas aeruginosa PAO1

Similar known gene clusters from MIBiG 4.0

NRPS/PKS substrates

NRPS/PKS substrate predictions

auaEII

AMP-binding (22..420): X

nrpys: Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: TFGNVAGHIK
Nearest Stachelhaus code(s):
Stachelhaus code match:: 0% (weak)

auaE

AMP-binding (18..415): X

nrpys: Gly, Ala, Val, Leu, Ile, Abu, Ival

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: GGNFVAGHIK
Nearest Stachelhaus code(s):: diOH-Bz AANFVSGAIK (44% 8Å match)
Stachelhaus code match:: 60% (weak)