BGC0002474: agrobactin biosynthetic gene cluster from Agrobacterium tumefaciens
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
View antiSMASH-generated output
Download Cluster GenBank file
Download region SVG
Location: 1 - 7,390 nt. (total: 7,390 nt).
This entry is originally from NCBI GenBank AB083344.2.

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset zoomreset view
zoomzoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
General
Compounds
Genes
History
NRPS/PKS domains
KnownClusterBlast
General information about the BGC
MIBiG accession BGC0002474
Short description agrobactin biosynthetic gene cluster from Agrobacterium tumefaciens
Status Minimal annotation: yes
A minimal annotation only contains information on the BGC loci and one or more linked chemical product(s)

Completeness: Unknown
Whether the loci encodes everything needed for the pathway producing the compound(s)
Biosynthetic class(es)
  • NRP
Loci NCBI GenBank: AB083344.2
Compounds
  • agrobactin
Species Agrobacterium tumefaciens [taxonomy]
References
Chemical products information
agrobactin
Copy SMILES
Chemical database entries
NPAtlas
List of genes involved in compound(s) production
Identifiers Position Product Functions Evidence Extra
  • BAC57933.1
  • agbF
 104 - 1750 (-) probable non-ribosomal peptide synthase
copy AA seq
copy Nt seq
  • BAC16757.2
  • agbC
 1949 - 2977 (+) probable isochorismate synthase
copy AA seq
copy Nt seq
  • BAC16758.1
  • agbE
 3142 - 4767 (+) probable 2,3-dihydroxybenzoate-AMP ligase protein
copy AA seq
copy Nt seq
  • BAC16759.1
  • agbB
 4860 - 5729 (+) probable 2,3-dihydro-2,3-dihydroxybenzoate synthetase, isochorismatase protein
copy AA seq
copy Nt seq
  • BAC16760.1
  • agbA
 5743 - 6498 (+) probable 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase protein
copy AA seq
copy Nt seq
  • BAC57934.1
  • agbD
 6529 - 7254 (+) probable phosphopantetheinyl transferase
copy AA seq
copy Nt seq
Annotation changelog
MIBiG version Submitter Notes
3.0
  • Hidden contributor (ID: AAAAAAAAAAAAAAAAAAAAAAAA, no GDPR consent given).
  • Entry added
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.