BGC0000921 - 1 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

BGC0000921 (Pseudomonas putida)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	NRPS-like	1	15,751

BGC0000921 - Region 1 - NRPS-like

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Location: 1 - 15,751 nt. (total: 15,751 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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Gene details

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MIBiG

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

External annotation

Name		MIBiG
Version		3.0

Type		Subregion
Location		1 - 15,752
Label		BGC0000921

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000921.1	1.00	Other, Polyketide, NRP, , (, S, h, i, k, i, m, a, t, e, -, d, e, r, i, v, e, d, )	promysalin	Pseudomonas putida
BGC0000427.1	0.33	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0000375.1	0.29	NRP	indigoidine	Streptomyces chromofuscus
BGC0000900.1	0.27	Other	ferrichrome	Aspergillus oryzae
BGC0000348.1	0.27	NRP	ergovaline	Epichloe festucae var. lolii
BGC0001249.1	0.27	NRP	dimethylcoprogen	Alternaria alternata
BGC0000876.1	0.27	Other	neopolyoxin C	Streptomyces tendae
BGC0000980.1	0.25	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 22D11
BGC0000979.1	0.25	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 10E9
BGC0001479.1	0.23	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000921.1	1.00	Other, Polyketide, NRP, , (, S, h, i, k, i, m, a, t, e, -, d, e, r, i, v, e, d, )	promysalin	Pseudomonas putida
BGC0000427.1	0.66	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0000375.1	0.62	NRP	indigoidine	Streptomyces chromofuscus
BGC0000900.1	0.61	Other	ferrichrome	Aspergillus oryzae
BGC0000348.1	0.61	NRP	ergovaline	Epichloe festucae var. lolii
BGC0001249.1	0.61	NRP	dimethylcoprogen	Alternaria alternata
BGC0000876.1	0.60	Other	neopolyoxin C	Streptomyces tendae
BGC0000980.1	0.59	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 22D11
BGC0000979.1	0.59	NRP, Polyketide	cylindrospermopsin	Aphanizomenon sp. 10E9
BGC0001479.1	0.57	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102

Similar known gene clusters

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 15751:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (pro)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ppgJ

Search NORINE for peptide: strict or relaxed

AMP-binding (15..416): pro

NRPSPredictor2: pro

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: pro, pip
Small clusters prediction:: pro
Single AA prediction:: pro

Stachelhaus prediction details:

Stachelhaus sequence:: DVQFvAHVVK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 90% (moderate)

ppgM

Search NORINE for peptide: strict or relaxed

AMP-binding (29..429): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: dhb, sal
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: aLPsQGiLCK
Nearest Stachelhaus code:: dhb
Stachelhaus code match:: 70% (weak)