BGC0000956 - 1 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

BGC0000956 (Pantoea agglomerans)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	NRPS-like,arylpolyene	1	28,485

BGC0000956 - Region 1 - NRPS-like,arylpolyene

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Location: 1 - 28,485 nt. (total: 28,485 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))
arylpolyene: (APE_KS1 or APE_KS2)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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Gene details

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MIBiG

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

External annotation

Name		MIBiG
Version		3.0

Type		Subregion
Location		1 - 28,486
Label		BGC0000956

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000956.1	1.81	NRP, Polyketide	andrimid	Pantoea agglomerans
BGC0000900.1	0.63	Other	ferrichrome	Aspergillus oryzae
BGC0000375.1	0.63	NRP	indigoidine	Streptomyces chromofuscus
BGC0000427.1	0.62	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0000348.1	0.61	NRP	ergovaline	Epichloe festucae var. lolii
BGC0001249.1	0.61	NRP	dimethylcoprogen	Alternaria alternata
BGC0001871.1	0.61	NRP	L-2-amino-4-methoxy-trans-3-butenoic acid	Pseudomonas aeruginosa PAO1
BGC0002002.1	0.57	NRP	1,6-phenazinedimethanol, fontizine A	Serratia fonticola
BGC0000836.1	0.56	Other	APE Ec	Escherichia coli CFT073
BGC0002008.1	0.56	Other	aryl polyenes	Xenorhabdus doucetiae

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000956.1	0.97	NRP, Polyketide	andrimid	Pantoea agglomerans
BGC0000900.1	0.65	Other	ferrichrome	Aspergillus oryzae
BGC0000375.1	0.65	NRP	indigoidine	Streptomyces chromofuscus
BGC0000427.1	0.65	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0000348.1	0.64	NRP	ergovaline	Epichloe festucae var. lolii
BGC0001249.1	0.64	NRP	dimethylcoprogen	Alternaria alternata
BGC0001871.1	0.64	NRP	L-2-amino-4-methoxy-trans-3-butenoic acid	Pseudomonas aeruginosa PAO1
BGC0002002.1	0.62	NRP	1,6-phenazinedimethanol, fontizine A	Serratia fonticola
BGC0000836.1	0.62	Other	APE Ec	Escherichia coli CFT073
BGC0002008.1	0.61	Other	aryl polyenes	Xenorhabdus doucetiae

Similar known gene clusters

No matches found.

Module view

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 28485:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (val) + (mal) + (mal) + (gly)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

AAO39104.1

Search NORINE for peptide: strict or relaxed

AMP-binding (32..425): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DmlsLGaMCK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 60% (weak)

AAO39105.1

Search NORINE for peptide: strict or relaxed

AMP-binding (25..403): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAFWIGGvFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 90% (moderate)

AAO39110.1

Search NORINE for peptide: strict or relaxed

AMP-binding (8..391): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGvVWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 90% (moderate)