BGC0000116 - 1 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

BGC0000116 (Pseudonocardia autotrophica)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	T1PKS	1	125,717	nystatin A1	Polyketide:Modular type I + Saccharide:Hybrid/tailoring	72%

BGC0000116 - Region 1 - T1PKS

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Location: 1 - 125,717 nt. (total: 125,717 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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TTA codons

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Gene details

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MIBiG

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

External annotation

Name		MIBiG
Version		3.0

Type		Subregion
Location		1 - 125,718
Label		BGC0000116

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000116.1	0.80	Polyketide	nystatin-like Pseudonocardia polyene	Pseudonocardia autotrophica
BGC0001709.1	0.38	Polyketide	nystatin	Streptomyces albulus
BGC0000018.1	0.36	Polyketide	angolamycin	Streptomyces eurythermus
BGC0000115.1	0.33	Polyketide, Saccharide	nystatin A1	Streptomyces noursei ATCC 11455
BGC0002031.1	0.32	Alkaloid	kitasetaline	Kitasatospora setae KM-6054
BGC0001164.1	0.31	Polyketide	1-heptadecene	Cyanothece sp. PCC 7822
BGC0000160.1	0.31	Polyketide	terreic acid	Aspergillus terreus NIH2624
BGC0000120.1	0.30	Polyketide	patulin	Penicillium expansum
BGC0001596.1	0.30	Polyketide	fluostatins M-Q	Streptomyces albus
BGC0001273.1	0.30	Polyketide	asperlactone	Aspergillus ochraceus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000116.1	0.93	Polyketide	nystatin-like Pseudonocardia polyene	Pseudonocardia autotrophica
BGC0001709.1	0.70	Polyketide	nystatin	Streptomyces albulus
BGC0000018.1	0.68	Polyketide	angolamycin	Streptomyces eurythermus
BGC0000115.1	0.66	Polyketide, Saccharide	nystatin A1	Streptomyces noursei ATCC 11455
BGC0002031.1	0.66	Alkaloid	kitasetaline	Kitasatospora setae KM-6054
BGC0001164.1	0.64	Polyketide	1-heptadecene	Cyanothece sp. PCC 7822
BGC0000160.1	0.64	Polyketide	terreic acid	Aspergillus terreus NIH2624
BGC0000120.1	0.64	Polyketide	patulin	Penicillium expansum
BGC0001596.1	0.64	Polyketide	fluostatins M-Q	Streptomyces albus
BGC0001273.1	0.64	Polyketide	asperlactone	Aspergillus ochraceus

Similar known gene clusters

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 125717:

Rough prediction of core scaffold based on assumed PKS linker matching; tailoring reactions not taken into account

Polymer prediction:: (mal) + (ccmal - ohmal - Me-ohmal - ohmal - ohmal - ohmal) + (redmal - ohmal - ccmal) + (Me-ohmal - Me-ohmal) + (ccmal - ccmal - redmal - ccmal - ccmal - ccmal) + (ccmal)
Non-colinear ordering:: cppA + cppI + cppJ + cppB + cppC + cppK

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

cppI

PKS_AT (567..874): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 83.3%; Propionyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 206.0
inactive: 96.6
Methoxymalonyl-CoA: 60.5
Methylmalonyl-CoA: 51.7
Benzoyl-CoA: 26.0
Isobutyryl-CoA: 21.3
Propionyl-CoA: 21.0
Acetyl-CoA: 18.3
trans-1,2-CPDA: 16.7
CHC-CoA: 14.9
2-Methylbutyryl-CoA: 14.0
fatty_acid: 12.6
3-Methylbutyryl-CoA: 0.0
Ethylmalonyl-CoA: -1.5

PKS_AT (2325..2621): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 100.0%; inactive: 79.2%; Methylmalonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 227.7
inactive: 109.6
Methoxymalonyl-CoA: 64.4
Methylmalonyl-CoA: 55.0
Propionyl-CoA: 30.8
Ethylmalonyl-CoA: 29.2
Acetyl-CoA: 25.0
Isobutyryl-CoA: 22.6
Benzoyl-CoA: 20.3
CHC-CoA: 20.2
trans-1,2-CPDA: 16.8
2-Methylbutyryl-CoA: 16.8
fatty_acid: 14.1
3-Methylbutyryl-CoA: 0.0

PKS_AT (3872..4169): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 100.0%; Methoxymalonyl-CoA: 91.7%; Malonyl-CoA: 87.5%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 215.2
Ethylmalonyl-CoA: 206.6
Methoxymalonyl-CoA: 180.1
2-Methylbutyryl-CoA: 133.9
trans-1,2-CPDA: 132.5
Propionyl-CoA: 118.7
Malonyl-CoA: 109.2
CHC-CoA: 101.9
Isobutyryl-CoA: 93.8
Benzoyl-CoA: 84.3
Acetyl-CoA: 61.9
fatty_acid: 37.7
inactive: 37.0
3-Methylbutyryl-CoA: 36.4

PKS_AT (5413..5711): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 75.0%; Methylmalonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 226.2
inactive: 111.9
Methoxymalonyl-CoA: 76.1
Methylmalonyl-CoA: 66.2
Isobutyryl-CoA: 34.4
Propionyl-CoA: 25.2
Ethylmalonyl-CoA: 20.4
Benzoyl-CoA: 19.9
fatty_acid: 14.5
Acetyl-CoA: 14.4
CHC-CoA: 13.3
trans-1,2-CPDA: 10.3
2-Methylbutyryl-CoA: 8.6
3-Methylbutyryl-CoA: 0.0

PKS_AT (6929..7228): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 79.2%; Methylmalonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 206.0
inactive: 95.5
Methoxymalonyl-CoA: 66.5
Methylmalonyl-CoA: 61.4
Ethylmalonyl-CoA: 29.2
Isobutyryl-CoA: 23.9
Propionyl-CoA: 22.1
Benzoyl-CoA: 17.8
CHC-CoA: 16.2
Acetyl-CoA: 15.7
fatty_acid: 14.8
2-Methylbutyryl-CoA: 9.3
trans-1,2-CPDA: 8.0
3-Methylbutyryl-CoA: 5.3

PKS_AT (8437..8726): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 79.2%; Methylmalonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 236.6
inactive: 112.1
Methoxymalonyl-CoA: 67.3
Methylmalonyl-CoA: 61.4
Propionyl-CoA: 36.5
Benzoyl-CoA: 29.1
Ethylmalonyl-CoA: 28.7
Isobutyryl-CoA: 27.2
Acetyl-CoA: 23.9
CHC-CoA: 19.2
fatty_acid: 15.2
trans-1,2-CPDA: 14.9
2-Methylbutyryl-CoA: 13.1
3-Methylbutyryl-CoA: 0.0

cppJ

PKS_AT (573..851): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 75.0%; Methylmalonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 223.7
inactive: 103.6
Methoxymalonyl-CoA: 68.5
Methylmalonyl-CoA: 64.1
Propionyl-CoA: 28.1
Isobutyryl-CoA: 27.6
Ethylmalonyl-CoA: 27.3
Benzoyl-CoA: 24.5
fatty_acid: 18.0
Acetyl-CoA: 17.8
CHC-CoA: 17.1
trans-1,2-CPDA: 15.6
2-Methylbutyryl-CoA: 9.7
3-Methylbutyryl-CoA: 0.0

PKS_AT (2626..2918): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 75.0%; Methylmalonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 193.8
inactive: 80.8
Methoxymalonyl-CoA: 50.8
Methylmalonyl-CoA: 44.3
Isobutyryl-CoA: 23.9
Propionyl-CoA: 21.5
Acetyl-CoA: 17.7
CHC-CoA: 17.2
Ethylmalonyl-CoA: 16.4
fatty_acid: 13.2
Benzoyl-CoA: 12.4
trans-1,2-CPDA: 8.1
2-Methylbutyryl-CoA: 0.6
3-Methylbutyryl-CoA: 0.0

PKS_AT (4149..4433): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 75.0%; Propionyl-CoA: 62.5%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 201.8
inactive: 85.6
Methoxymalonyl-CoA: 73.0
Methylmalonyl-CoA: 69.0
Isobutyryl-CoA: 40.7
fatty_acid: 35.4
Propionyl-CoA: 33.8
Ethylmalonyl-CoA: 30.3
CHC-CoA: 26.5
Acetyl-CoA: 17.4
trans-1,2-CPDA: 13.4
Benzoyl-CoA: 10.5
2-Methylbutyryl-CoA: 9.1
3-Methylbutyryl-CoA: 3.6

cppK

PKS_AT (553..841): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 83.3%; Propionyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 202.3
inactive: 102.6
Methoxymalonyl-CoA: 62.3
Methylmalonyl-CoA: 44.0
Isobutyryl-CoA: 24.9
Propionyl-CoA: 21.4
Ethylmalonyl-CoA: 18.5
Acetyl-CoA: 15.1
Benzoyl-CoA: 12.9
CHC-CoA: 11.5
trans-1,2-CPDA: 5.4
fatty_acid: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

cppA

PKS_AT (523..818): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 100.0%; inactive: 79.2%; Methylmalonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 227.1
inactive: 102.5
Methoxymalonyl-CoA: 65.9
Methylmalonyl-CoA: 62.4
Isobutyryl-CoA: 32.8
Ethylmalonyl-CoA: 32.7
Propionyl-CoA: 25.7
CHC-CoA: 19.2
Acetyl-CoA: 19.1
Benzoyl-CoA: 19.0
trans-1,2-CPDA: 13.0
fatty_acid: 12.5
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: -2.8

cppB

PKS_AT (564..861): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 100.0%; Malonyl-CoA: 91.7%; Methoxymalonyl-CoA: 91.7%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 199.1
Ethylmalonyl-CoA: 187.2
Methoxymalonyl-CoA: 166.1
trans-1,2-CPDA: 123.6
2-Methylbutyryl-CoA: 117.1
Malonyl-CoA: 98.8
Propionyl-CoA: 93.4
CHC-CoA: 72.5
Isobutyryl-CoA: 71.7
Benzoyl-CoA: 57.2
Acetyl-CoA: 35.9
fatty_acid: 31.6
3-Methylbutyryl-CoA: 30.1
inactive: 22.3

PKS_AT (2097..2401): mmal

ATSignature: Methylmalonyl-CoA

Top 3 matches:: Methylmalonyl-CoA: 100.0%; Methoxymalonyl-CoA: 91.7%; Malonyl-CoA: 87.5%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 213.8
Ethylmalonyl-CoA: 208.6
Methoxymalonyl-CoA: 180.6
trans-1,2-CPDA: 139.5
2-Methylbutyryl-CoA: 139.1
Propionyl-CoA: 116.3
CHC-CoA: 114.8
Malonyl-CoA: 107.4
Benzoyl-CoA: 78.7
Isobutyryl-CoA: 77.7
Acetyl-CoA: 53.4
fatty_acid: 51.4
inactive: 35.0
3-Methylbutyryl-CoA: 30.2

cppC

PKS_AT (544..838): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 75.0%; Propionyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 216.5
inactive: 95.8
Methoxymalonyl-CoA: 60.7
Methylmalonyl-CoA: 52.7
Propionyl-CoA: 29.5
Ethylmalonyl-CoA: 27.9
Isobutyryl-CoA: 23.3
CHC-CoA: 18.3
Acetyl-CoA: 17.1
Benzoyl-CoA: 15.1
trans-1,2-CPDA: 10.6
2-Methylbutyryl-CoA: 8.0
fatty_acid: 7.2
3-Methylbutyryl-CoA: 0.0

PKS_AT (2308..2601): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 79.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 204.0
inactive: 87.2
Methoxymalonyl-CoA: 50.5
Methylmalonyl-CoA: 49.7
Propionyl-CoA: 29.0
Ethylmalonyl-CoA: 25.8
Isobutyryl-CoA: 22.0
Acetyl-CoA: 16.2
Benzoyl-CoA: 14.8
trans-1,2-CPDA: 10.5
2-Methylbutyryl-CoA: 9.3
fatty_acid: 6.8
3-Methylbutyryl-CoA: 0.0
CHC-CoA: -1.3

PKS_AT (4052..4342): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 79.2%; Methylmalonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 227.6
inactive: 103.3
Methoxymalonyl-CoA: 60.8
Methylmalonyl-CoA: 55.2
Propionyl-CoA: 30.2
Ethylmalonyl-CoA: 23.8
Acetyl-CoA: 23.1
Isobutyryl-CoA: 19.8
Benzoyl-CoA: 17.7
CHC-CoA: 14.7
2-Methylbutyryl-CoA: 12.3
trans-1,2-CPDA: 9.1
fatty_acid: 0.0
3-Methylbutyryl-CoA: 0.0

PKS_AT (6112..6404): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 75.0%; Methylmalonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 214.4
inactive: 106.2
Methoxymalonyl-CoA: 59.3
Methylmalonyl-CoA: 57.2
Propionyl-CoA: 39.8
Acetyl-CoA: 22.9
Isobutyryl-CoA: 20.5
Ethylmalonyl-CoA: 19.1
Benzoyl-CoA: 13.9
CHC-CoA: 12.7
fatty_acid: 9.6
trans-1,2-CPDA: 8.7
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: -3.2

PKS_AT (7847..8136): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 75.0%; Methylmalonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 215.3
inactive: 94.3
Methoxymalonyl-CoA: 62.8
Methylmalonyl-CoA: 59.0
Propionyl-CoA: 31.8
Ethylmalonyl-CoA: 27.1
Isobutyryl-CoA: 24.9
Acetyl-CoA: 19.2
2-Methylbutyryl-CoA: 17.6
CHC-CoA: 16.3
Benzoyl-CoA: 12.3
fatty_acid: 11.9
trans-1,2-CPDA: 0.0
3-Methylbutyryl-CoA: 0.0

PKS_AT (9575..9873): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 100.0%; inactive: 79.2%; Methylmalonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 232.5
inactive: 110.2
Methoxymalonyl-CoA: 57.9
Methylmalonyl-CoA: 55.2
Propionyl-CoA: 35.5
Ethylmalonyl-CoA: 29.5
Acetyl-CoA: 27.4
CHC-CoA: 24.4
Benzoyl-CoA: 23.7
trans-1,2-CPDA: 21.8
Isobutyryl-CoA: 16.6
2-Methylbutyryl-CoA: 15.5
fatty_acid: 10.4
3-Methylbutyryl-CoA: 0.0