BGC0000328 - 1 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

BGC0000328 (Pseudomonas savastanoi pv. glycinea (Pseudomonas syringae pv. glycinea))

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	NRPS-like	1	6,497

BGC0000328 - Region 1 - NRPS-like

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Location: 1 - 6,497 nt. (total: 6,497 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

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Gene details

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MIBiG

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

External annotation

Name		MIBiG
Version		3.0

Type		Subregion
Location		1 - 6,498
Label		BGC0000328

Detailed domain annotation

Selected features only

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Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000328.1	1.00	NRP	coronatine	Pseudomonas savastanoi pv. glycinea
BGC0001527.1	0.27	Other	basidioferrin	Gelatoporia subvermispora
BGC0002002.1	0.23	NRP	1,6-phenazinedimethanol, fontizine A	Serratia fonticola
BGC0000427.1	0.21	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0000382.1	0.19	NRP	lipstatin	Streptomyces toxytricini
BGC0001621.1	0.18	NRP	imizoquin A, imizoquin B, imizoquin C, imizoquin D, TMC-2A, TMC-2B	Aspergillus flavus NRRL3357
BGC0001627.1	0.18	NRP	isonitrile lipopeptides	Mycobacterium tuberculosis H37Rv
BGC0001758.1	0.18	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0000876.1	0.18	Other	neopolyoxin C	Streptomyces tendae
BGC0001128.1	0.18	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000328.1	1.00	NRP	coronatine	Pseudomonas savastanoi pv. glycinea
BGC0001527.1	0.61	Other	basidioferrin	Gelatoporia subvermispora
BGC0002002.1	0.57	NRP	1,6-phenazinedimethanol, fontizine A	Serratia fonticola
BGC0000427.1	0.53	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0000382.1	0.51	NRP	lipstatin	Streptomyces toxytricini
BGC0001621.1	0.50	NRP	imizoquin A, imizoquin B, imizoquin C, imizoquin D, TMC-2A, TMC-2B	Aspergillus flavus NRRL3357
BGC0001627.1	0.50	NRP	isonitrile lipopeptides	Mycobacterium tuberculosis H37Rv
BGC0001758.1	0.49	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0000876.1	0.49	Other	neopolyoxin C	Streptomyces tendae
BGC0001128.1	0.49	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1

Similar known gene clusters

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 6497:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

AAQ93484.1

Search NORINE for peptide: strict or relaxed

AMP-binding (14..409): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAfLyGgVFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 70% (weak)