BGC0000329 - 1 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

BGC0000329 (Pseudomonas corrugata)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	NRPS,hserlactone	1	21,538	syringomycin	NRP	58%

BGC0000329 - Region 1 - NRPS,hserlactone

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Location: 1 - 21,538 nt. (total: 21,538 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))
hserlactone: Autoind_synth

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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Gene details

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MIBiG

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

External annotation

Name		MIBiG
Version		3.0

Type		Subregion
Location		1 - 21,539
Label		BGC0000329

Detailed domain annotation

Selected features only

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Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000329.1	1.33	NRP	corpeptin A, corpeptin B	Pseudomonas corrugata
BGC0000427.1	0.35	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001733.1	0.34	RiPP	PcpA	Pleurocapsa sp. PCC 7327
BGC0000853.1	0.34	Other	ectoine	Streptomyces anulatus
BGC0002052.1	0.34	Other, , (, E, c, t, o, i, n, e, )	ectoine	Streptomyces sp.
BGC0000855.1	0.34	Other	ectoine	Methylomicrobium kenyense
BGC0002075.1	0.34	NRP, Alkaloid	Pyreudione A, Pyreudione B, Pyreudione C, Pyreudione D, Pyreudione E	Pseudomonas fluorescens
BGC0000854.1	0.33	Other	ectoine	Methylomicrobium alcaliphilum 20Z
BGC0000859.1	0.33	Other	ectoine	Methylomicrobium alcaliphilum
BGC0000858.1	0.33	Other	ectoine	Methylobacter marinus

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000329.1	1.00	NRP	corpeptin A, corpeptin B	Pseudomonas corrugata
BGC0000427.1	0.68	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0002075.1	0.67	NRP, Alkaloid	Pyreudione A, Pyreudione B, Pyreudione C, Pyreudione D, Pyreudione E	Pseudomonas fluorescens
BGC0000900.1	0.65	Other	ferrichrome	Aspergillus oryzae
BGC0001249.1	0.65	NRP	dimethylcoprogen	Alternaria alternata
BGC0001132.1	0.64	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0000410.1	0.62	NRP	pseudomonine	Pseudomonas fluorescens
BGC0001128.1	0.62	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001479.1	0.61	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102
BGC0001833.1	0.61	NRP	icosalide A, icosalide B	Burkholderia gladioli

Similar known gene clusters

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 21538:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ser - ile)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

crpC

Search NORINE for peptide: strict or relaxed

AMP-binding (1..320): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHMSLVDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

AMP-binding (1001..1396): ile

NRPSPredictor2: ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: ile

Stachelhaus prediction details:

Stachelhaus sequence:: DAMFLGCTfK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 90% (moderate)