BGC0002002 - 1 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

BGC0002002 (Serratia fonticola)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	NRPS-like,phenazine	1	14,395	lomofungin	Other	21%

BGC0002002 - Region 1 - NRPS-like,phenazine

Download region GenBank file

Download region SVG

Location: 1 - 14,395 nt. (total: 14,395 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))
phenazine: phzB

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

External annotation

Name		MIBiG
Version		3.0

Type		Subregion
Location		1 - 14,396
Label		BGC0002002

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002002.1	1.86	NRP	1,6-phenazinedimethanol, fontizine A	Serratia fonticola
BGC0000936.1	0.56	Other	pyocyanine	Pseudomonas aeruginosa PAO1
BGC0001868.1	0.52	Other, , (, P, h, e, n, a, z, i, n, e, )	iodinin	Xenorhabdus szentirmaii DSM 16338
BGC0000328.1	0.48	NRP	coronatine	Pseudomonas savastanoi pv. glycinea
BGC0000427.1	0.42	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001627.1	0.42	NRP	isonitrile lipopeptides	Mycobacterium tuberculosis H37Rv
BGC0000382.1	0.39	NRP	lipstatin	Streptomyces toxytricini
BGC0000231.1	0.39	Polyketide	griseusin	Streptomyces griseus
BGC0001871.1	0.38	NRP	L-2-amino-4-methoxy-trans-3-butenoic acid	Pseudomonas aeruginosa PAO1
BGC0001621.1	0.37	NRP	imizoquin A, imizoquin B, imizoquin C, imizoquin D, TMC-2A, TMC-2B	Aspergillus flavus NRRL3357

Reference	Similarity score	Type	Compound(s)	Organism
BGC0002002.1	0.98	NRP	1,6-phenazinedimethanol, fontizine A	Serratia fonticola
BGC0000936.1	0.62	Other	pyocyanine	Pseudomonas aeruginosa PAO1
BGC0001868.1	0.58	Other, , (, P, h, e, n, a, z, i, n, e, )	iodinin	Xenorhabdus szentirmaii DSM 16338
BGC0000328.1	0.57	NRP	coronatine	Pseudomonas savastanoi pv. glycinea
BGC0000427.1	0.54	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001627.1	0.53	NRP	isonitrile lipopeptides	Mycobacterium tuberculosis H37Rv
BGC0000382.1	0.52	NRP	lipstatin	Streptomyces toxytricini
BGC0000231.1	0.51	Polyketide	griseusin	Streptomyces griseus
BGC0001871.1	0.51	NRP	L-2-amino-4-methoxy-trans-3-butenoic acid	Pseudomonas aeruginosa PAO1
BGC0001621.1	0.50	NRP	imizoquin A, imizoquin B, imizoquin C, imizoquin D, TMC-2A, TMC-2B	Aspergillus flavus NRRL3357

Similar known gene clusters

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 14395:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

WN53_RS03350

Search NORINE for peptide: strict or relaxed

AMP-binding (28..403): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGLIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

WN53_RS03365

Search NORINE for peptide: strict or relaxed

AMP-binding (72..303): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: hIiqITlLkK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 50% (weak)