BGC0001149 - 1 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

BGC0001149 (Pseudomonas sp. SHC52)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	NRPS	1	12,786	syringomycin	NRP	11%

BGC0001149 - Region 1 - NRPS

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Location: 1 - 12,786 nt. (total: 12,786 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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Gene details

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MIBiG

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

External annotation

Name		MIBiG
Version		3.0

Type		Subregion
Location		1 - 12,787
Label		BGC0001149

Detailed domain annotation

Selected features only

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Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001149.1	1.00	NRP, Saccharide	brabantamide A	Pseudomonas sp. SHC52
BGC0001873.1	0.41	NRP	pyrrolizixenamide A	Xenorhabdus szentirmaii DSM 16338
BGC0002075.1	0.32	NRP, Alkaloid	Pyreudione A, Pyreudione B, Pyreudione C, Pyreudione D, Pyreudione E	Pseudomonas fluorescens
BGC0001615.1	0.31	NRP	hexose-palythine-serine, hexose-shinorine	Heteroscytonema crispum UCFS10
BGC0001833.1	0.27	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001132.1	0.27	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001825.1	0.26	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0001128.1	0.26	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001844.1	0.25	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0000313.1	0.25	NRP	beauvericin	Beauveria bassiana

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001149.1	1.00	NRP, Saccharide	brabantamide A	Pseudomonas sp. SHC52
BGC0001873.1	0.72	NRP	pyrrolizixenamide A	Xenorhabdus szentirmaii DSM 16338
BGC0002075.1	0.65	NRP, Alkaloid	Pyreudione A, Pyreudione B, Pyreudione C, Pyreudione D, Pyreudione E	Pseudomonas fluorescens
BGC0001615.1	0.64	NRP	hexose-palythine-serine, hexose-shinorine	Heteroscytonema crispum UCFS10
BGC0001833.1	0.61	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001132.1	0.60	NRP	xenotetrapeptide	Xenorhabdus nematophila ATCC 19061
BGC0001825.1	0.60	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0001128.1	0.59	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1
BGC0001844.1	0.59	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0000313.1	0.58	NRP	beauvericin	Beauveria bassiana

Similar known gene clusters

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 12786:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ser - pro)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

BN844_0706

Search NORINE for peptide: strict or relaxed

AMP-binding (468..871): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHLSLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

AMP-binding (1533..1940): pro

NRPSPredictor2: pro

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: pro, pip
Small clusters prediction:: pro
Single AA prediction:: pro

Stachelhaus prediction details:

Stachelhaus sequence:: DVQFsAHVVK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 90% (moderate)