BGC0001050 - 1 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

BGC0001050 (Tistrella bauzanensis)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	NRPS,NRPS-like	1	19,730

BGC0001050 - Region 1 - NRPS,NRPS-like

Download region GenBank file

Download region SVG

Location: 1 - 19,730 nt. (total: 19,730 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))
NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

MIBiG

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

External annotation

Name		MIBiG
Version		3.0

Type		Subregion
Location		1 - 19,731
Label		BGC0001050

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001050.1	1.83	NRP, Polyketide	thalassospiramide A	Tistrella bauzanensis
BGC0000389.1	0.67	NRP	massetolide A	Pseudomonas fluorescens SS101
BGC0002071.1	0.66	NRP	Virginiafactin	Pseudomonas sp. QS1027
BGC0001133.1	0.60	NRP	taxlllaid A	Xenorhabdus bovienii SS-2004
BGC0001876.1	0.57	NRP	thalassospiramide A	Thalassospira sp. CNJ-328
BGC0001261.1	0.55	NRP	AM-toxin	Alternaria alternata
BGC0001833.1	0.55	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001047.1	0.54	NRP, Polyketide	syringolin A	Pseudomonas syringae
BGC0001825.1	0.54	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0000351.1	0.54	NRP	exochelin	Mycolicibacterium smegmatis

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001050.1	0.97	NRP, Polyketide	thalassospiramide A	Tistrella bauzanensis
BGC0000389.1	0.67	NRP	massetolide A	Pseudomonas fluorescens SS101
BGC0002071.1	0.66	NRP	Virginiafactin	Pseudomonas sp. QS1027
BGC0001133.1	0.63	NRP	taxlllaid A	Xenorhabdus bovienii SS-2004
BGC0001876.1	0.62	NRP	thalassospiramide A	Thalassospira sp. CNJ-328
BGC0001261.1	0.61	NRP	AM-toxin	Alternaria alternata
BGC0001833.1	0.61	NRP	icosalide A, icosalide B	Burkholderia gladioli
BGC0001047.1	0.61	NRP, Polyketide	syringolin A	Pseudomonas syringae
BGC0001825.1	0.61	NRP	xenematide	Xenorhabdus nematophila AN6/1
BGC0000351.1	0.60	NRP	exochelin	Mycolicibacterium smegmatis

Similar known gene clusters

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 19730:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (val - ser - ohmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ttbA

Search NORINE for peptide: strict or relaxed

AMP-binding (1072..1465): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DALWIGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 100% (strong)

AMP-binding (2141..2545): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHFSLVDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

ttbB

Search NORINE for peptide: strict or relaxed

AMP-binding (436..726): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: glu

Stachelhaus prediction details:

Stachelhaus sequence:: DAiDvGaVgK
Nearest Stachelhaus code:: gln
Stachelhaus code match:: 60% (weak)