BGC0001838 - 1 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

BGC0001838 (Pseudomonas putida)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	NRPS	1	31,000	bananamide 1 / bananamide 2 / bananamide 3	NRP:Cyclic depsipeptide	62%

BGC0001838 - Region 1 - NRPS

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Location: 1 - 31,000 nt. (total: 31,000 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

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MIBiG

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

External annotation

Name		MIBiG
Version		3.0

Type		Subregion
Location		1 - 31,001
Label		BGC0001838

Detailed domain annotation

Selected features only

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Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001838.1	1.00	NRP	WLIP	Pseudomonas putida
BGC0000389.1	0.53	NRP	massetolide A	Pseudomonas fluorescens SS101
BGC0002071.1	0.53	NRP	Virginiafactin	Pseudomonas sp. QS1027
BGC0000463.1	0.51	NRP	xantholysin A, xantholysin B, xantholysin C	Pseudomonas putida
BGC0000323.1	0.40	NRP	cichofactin A, cichofactin B	Pseudomonas cichorii
BGC0000435.1	0.40	NRP	syringafactin	Pseudomonas syringae pv. tomato str. DC3000
BGC0001758.1	0.38	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001131.1	0.37	NRP	ambactin	Xenorhabdus miraniensis
BGC0001844.1	0.36	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001128.1	0.35	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1

Reference	Similarity score	Type	Compound(s)	Organism
BGC0001838.1	1.00	NRP	WLIP	Pseudomonas putida
BGC0000389.1	0.80	NRP	massetolide A	Pseudomonas fluorescens SS101
BGC0002071.1	0.80	NRP	Virginiafactin	Pseudomonas sp. QS1027
BGC0000463.1	0.79	NRP	xantholysin A, xantholysin B, xantholysin C	Pseudomonas putida
BGC0000323.1	0.72	NRP	cichofactin A, cichofactin B	Pseudomonas cichorii
BGC0000435.1	0.72	NRP	syringafactin	Pseudomonas syringae pv. tomato str. DC3000
BGC0001758.1	0.70	NRP	rhizomide A, rhizomide B, rhizomide C	Paraburkholderia rhizoxinica HKI 454
BGC0001131.1	0.69	NRP	ambactin	Xenorhabdus miraniensis
BGC0001844.1	0.69	NRP	holrhizin	Paraburkholderia rhizoxinica HKI 454
BGC0001128.1	0.68	NRP	luminmide	Photorhabdus laumondii subsp. laumondii TTO1

Similar known gene clusters

Module view

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 31000:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (thr - val - leu - ser) + (leu - ser - ile)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

wlpB

Search NORINE for peptide: strict or relaxed

AMP-binding (549..952): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

AMP-binding (1611..2004): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DALWmGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 90% (moderate)

AMP-binding (2683..3070): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWFLGNVVK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 100% (strong)

AMP-binding (3728..4129): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHLSLvDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 90% (moderate)

wlpC

Search NORINE for peptide: strict or relaxed

AMP-binding (551..938): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWFLGNVVK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 100% (strong)

AMP-binding (1593..1993): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHLSLvDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 90% (moderate)

AMP-binding (2656..3051): ile

NRPSPredictor2: ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: ile

Stachelhaus prediction details:

Stachelhaus sequence:: DAMFLGCTYK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 100% (strong)