BGC0000419 - 1 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

BGC0000419 (Amycolatopsis japonica)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1	NRPS-like,T3PKS,NRPS	1	68,710	ristocetin	NRP	100%

BGC0000419 - Region 1 - NRPS,NRPS-like,T3PKS

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Location: 1 - 68,710 nt. (total: 68,710 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)
NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

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MIBiG

NRPS/PKS domains

MIBiG comparison

KnownClusterBlast

NRPS/PKS modules

External annotation

Name		MIBiG
Version		3.0

Type		Subregion
Location		1 - 68,711
Label		BGC0000419

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Analysis type:

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000419.1	1.46	NRP, Saccharide	ristomycin A	Amycolatopsis japonica
BGC0000418.1	1.09	NRP	ristocetin	Amycolatopsis lurida
BGC0000427.1	1.03	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0000375.1	0.93	NRP	indigoidine	Streptomyces chromofuscus
BGC0000900.1	0.89	Other	ferrichrome	Aspergillus oryzae
BGC0000348.1	0.88	NRP	ergovaline	Epichloe festucae var. lolii
BGC0001249.1	0.88	NRP	dimethylcoprogen	Alternaria alternata
BGC0001717.1	0.87	Alkaloid	okaramine B	Penicillium simplicissimum
BGC0001718.1	0.87	NRP	okaramine D	Aspergillus aculeatus ATCC 16872
BGC0001479.1	0.80	NRP	anabaenopeptin NZ857, nostamide A	Nostoc punctiforme PCC 73102

Reference	Similarity score	Type	Compound(s)	Organism
BGC0000419.1	0.91	NRP, Saccharide	ristomycin A	Amycolatopsis japonica
BGC0000418.1	0.81	NRP	ristocetin	Amycolatopsis lurida
BGC0001461.1	0.70	NRP	nogabecin	Amycolatopsis keratiniphila subsp. nogabecina
BGC0001460.1	0.70	NRP	decaplanin	Amycolatopsis decaplanina DSM 44594
BGC0000455.1	0.70	NRP	vancomycin	Amycolatopsis orientalis HCCB10007
BGC0001955.1	0.69	Other	keratinimicin A, keratinimicin B, keratinimicin C, keratinimicin D	Amycolatopsis keratiniphila
BGC0000427.1	0.68	NRP	shinorine, 4-deoxygadusol, mycosporine glycine	Trichormus variabilis ATCC 29413
BGC0001459.1	0.67	NRP	decaplanin	Amycolatopsis regifaucium
BGC0000375.1	0.67	NRP	indigoidine	Streptomyces chromofuscus
BGC0001462.1	0.67	NRP	avoparcin	Amycolatopsis coloradensis

Similar known gene clusters

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 68710:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (hpg - D-bht) + (dhpg) + (D-hpg - D-hpg - bht) + (dhpg) + (tyr)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 0 - 33749:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (tyr)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 3, location 0 - 25003:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (tyr)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 4, location 13760 - 68710:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (hpg - D-bht) + (dhpg) + (D-hpg - D-hpg - bht) + (dhpg) + (tyr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

AJAP_32050

Search NORINE for peptide: strict or relaxed

AMP-binding (12..402): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: tyr

Stachelhaus prediction details:

Stachelhaus sequence:: DAATLAAVAK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 100% (strong)

AJAP_32130

Search NORINE for peptide: strict or relaxed

AMP-binding (469..864): dhpg

NRPSPredictor2: dhpg

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: dhpg, hpg
Single AA prediction:: dhpg

Stachelhaus prediction details:

Stachelhaus sequence:: DPYHeGTLCK
Nearest Stachelhaus code:: dhpg
Stachelhaus code match:: 90% (moderate)

AJAP_32135

Search NORINE for peptide: strict or relaxed

AMP-binding (456..845): hpg

NRPSPredictor2: hpg

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: dhpg, hpg
Single AA prediction:: hpg

Stachelhaus prediction details:

Stachelhaus sequence:: DIFHLGLLCK
Nearest Stachelhaus code:: hpg
Stachelhaus code match:: 100% (strong)

AMP-binding (1917..2304): hpg

NRPSPredictor2: hpg

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: dhpg, hpg
Single AA prediction:: hpg

Stachelhaus prediction details:

Stachelhaus sequence:: DAVHLGLLCK
Nearest Stachelhaus code:: hpg
Stachelhaus code match:: 100% (strong)

AMP-binding (3398..3785): bht

NRPSPredictor2: bht

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: bht

Stachelhaus prediction details:

Stachelhaus sequence:: DASTLGAICK
Nearest Stachelhaus code:: bht
Stachelhaus code match:: 100% (strong)

AJAP_32140

Search NORINE for peptide: strict or relaxed

AMP-binding (460..846): dhpg

NRPSPredictor2: dhpg

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: dhpg, hpg
Single AA prediction:: dhpg

Stachelhaus prediction details:

Stachelhaus sequence:: DpYNqGTfCK
Nearest Stachelhaus code:: dhpg
Stachelhaus code match:: 70% (weak)

AJAP_32145

Search NORINE for peptide: strict or relaxed

AMP-binding (14..401): hpg

NRPSPredictor2: hpg

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: dhpg, hpg
Single AA prediction:: hpg

Stachelhaus prediction details:

Stachelhaus sequence:: DAcHLGLLCK
Nearest Stachelhaus code:: hpg
Stachelhaus code match:: 90% (moderate)

AMP-binding (1031..1417): bht

NRPSPredictor2: bht

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: bht

Stachelhaus prediction details:

Stachelhaus sequence:: DTSKtAAICK
Nearest Stachelhaus code:: bht
Stachelhaus code match:: 90% (moderate)